Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00334
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 56 5e-09
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.12
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.27
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 29 0.63
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 28 1.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 28 1.1
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 28 1.1
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 1.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.5
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.5
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 27 3.4
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 4.4
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 26 5.9
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 26 5.9
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 7.8
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 7.8
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 7.8
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 25 7.8
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 56.0 bits (129), Expect = 5e-09
Identities = 23/54 (42%), Positives = 39/54 (72%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEI 672
KGG I+D+H+C F E D V V+R +++ L++RL +RGY+ +K+++N + EI
Sbjct: 76 KGGCIIDWHTCGLFSEELIDLVVVLRTDHSKLWERLESRGYSLEKIQENNEAEI 129
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/74 (32%), Positives = 46/74 (62%)
Frame = +2
Query: 293 NSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLN 472
N R LPN+++ GTPG GK+TL +A+ T+ + ++ +E++ +D +++ ++
Sbjct: 3 NEERELPNIIICGTPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVD 62
Query: 473 EDKLLDIMEGMMQK 514
EDK+LD +E + K
Sbjct: 63 EDKVLDYLEPKLLK 76
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.5 bits (68), Expect = 0.12
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = -3
Query: 522 VSSFCIIPSIMSSN---LSSFKNGH*YSGSYSSKQLCSWAIFDTSLQANLVRSAKFLHNV 352
+SS I+ SI SS+ +SS + YS SY ++ S ++ T+ A V S V
Sbjct: 588 LSSSTIVSSINSSSSVFISSVSSSLQYSSSYVTETTTSGSVGFTTTIATPVGSTAGTVVV 647
Query: 351 DLPTPG-VPVTKTFGRV 304
D+PTP V T T G V
Sbjct: 648 DIPTPSWVTETVTSGSV 664
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 284 IKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
I++ S RT N ++ G PGVGK+++ LA R
Sbjct: 194 IRVLSRRTKNNPVLIGEPGVGKTSIAEGLARR 225
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 29.1 bits (62), Expect = 0.63
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Frame = +2
Query: 263 SSFTKYQIKMNSGRTLPNV-LVTGTPGVGKSTLCRNLADRTK-FAWRDVSNIAQE--HNC 430
SS + + +P V L+TG G+G+S+L + + DR + + ++Q ++
Sbjct: 368 SSSQSLSLSQRASEVMPLVILITGCEGIGESSLIQTICDRREGYMAITKFEVSQSIVYSA 427
Query: 431 LDEYDPEYQCPFLNEDKLL--DIMEGMMQKEET*LTITVVIFSL 556
+ E+ L ED+LL + E + K E+ L + +F L
Sbjct: 428 IVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLDSVFDL 471
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 266 SFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYD 445
SF + + N+G L V+G PG GK+ L N+ D + V N+ NC+ +
Sbjct: 181 SFFRQHLDANAGGAL---YVSGAPGTGKTVLLHNVLDHVVSDYPKV-NVCY-INCMTINE 235
Query: 446 PE 451
P+
Sbjct: 236 PK 237
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 275 KYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADRT-KFAWRDVSNIAQEHNCLDEYDPE 451
KY+ N V VTG G GKS L +AD KF + +S+ H Y
Sbjct: 368 KYRPVDNEATYCQVVTVTGEKGSGKSNLLNAVADEARKFGYFAMSSFKGHH--FSPYSAI 425
Query: 452 YQC 460
++C
Sbjct: 426 FKC 428
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 520 NIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
+IV Y DF + G+ + N L+D + AR ++LED++ C +FA +
Sbjct: 559 HIVKY--LDFVKTKHHFGIVLDYVNGGELFDYILAR----RRLEDSVACRLFAQL 607
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 299 GRTLPN-VLVTGTPGVGKSTLCRNLA 373
G LP VL+TG PG GK+ L R +A
Sbjct: 296 GGKLPRGVLLTGPPGTGKTMLARAVA 321
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADRT 382
+ L +L+ G+PGVGK++L LA T
Sbjct: 1557 QVLKPILLEGSPGVGKTSLITALARET 1583
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLAD 376
VL+ G G GK+T+C+ LA+
Sbjct: 1189 VLLVGDTGCGKTTVCQILAE 1208
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 314 NVLVTGTPGVGKSTLCRNLADR 379
NVLV G G GKSTL L +R
Sbjct: 97 NVLVLGESGSGKSTLVNTLLNR 118
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLADR 379
V V G PG GKSTL ++L R
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRR 97
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLADR 379
+ V G PG GK T C LA++
Sbjct: 5 IFVLGGPGAGKGTQCDRLAEK 25
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 586 RCNNTTLYDRLAARGYTGKKLEDNIQ 663
RC T+ RL RG T + +DNI+
Sbjct: 116 RCGQETMLKRLIHRGKTSGRSDDNIE 141
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 305 TLPNVLVTGTPGVGKSTLCRNLADR 379
T +L+TG GKSTLC L +
Sbjct: 153 TSSKILITGDLNAGKSTLCNALVHK 177
>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 84 LFTIFKLHLFVDCFVIINYYFATVSN---FLFYF*TI 185
L +F +F +C V + YYF S+ F+++F T+
Sbjct: 33 LLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYFFLTL 69
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 5.9
Identities = 7/16 (43%), Positives = 15/16 (93%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKST 355
+P+++++G PG+GK+T
Sbjct: 54 MPHLVISGMPGIGKTT 69
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 323 VTGTPGVGKSTLCRNLAD--RTKFAWRDVSNIAQE--HNCLDEYD 445
+ G PG GKSTLC LA +F V I + H L+E D
Sbjct: 34 LAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMDGFHYSLEELD 78
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLADRT--KFAWRDVSNIAQEH 424
+L+ G PG GK+ L R +A T KF S + Q++
Sbjct: 182 ILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKY 219
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 562 TAQGKNHNCDSQLCFLL-LHHTFHNVQ 485
T + K + D QLCFL+ L+ T HN++
Sbjct: 335 TIKNKEVSDDEQLCFLIHLNDTNHNLE 361
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 314 NVLVTGTPGVGKSTLCRNLADRTKFAWRDVSN 409
++ TG+ G GKS L R + + K +R S+
Sbjct: 327 SIFFTGSAGTGKSVLLRKIIEVLKSKYRKQSD 358
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 224 KQKLLEVILWYLSSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDV 403
K L E +++ F + ++ + +L+ G PG GK+ L R +A K + +
Sbjct: 388 KNSLKEAVIY----PFLRPELFQGLREPVQGMLLFGPPGTGKTMLARAVATEAKATFFSI 443
Query: 404 S 406
S
Sbjct: 444 S 444
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 273 VKLDERYHKITSNNFCFSEELMLLFSHCD*WFK 175
+ +++ Y ++ NFC + + L C WFK
Sbjct: 283 IPINDAYLRMMVINFCLANKPTLAVRFCQAWFK 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,036
Number of Sequences: 5004
Number of extensions: 60993
Number of successful extensions: 227
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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