Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00334
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0057 + 12872946-12873152,12873371-12873421,12876335-128764... 87 2e-17
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 33 0.16
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 32 0.37
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 32 0.49
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010... 31 1.1
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 30 1.5
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 30 1.5
06_01_0067 + 561910-561987,562698-562759,564293-564338,564701-56... 30 2.0
04_04_0251 + 23930789-23930960,23931065-23931128,23931641-239317... 30 2.0
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 29 2.6
04_01_0063 - 630345-633743 29 3.5
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 29 3.5
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 29 3.5
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 3.5
01_01_1051 + 8290395-8290760,8291611-8291820,8292874-8292978,829... 29 3.5
06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,519... 29 4.6
06_01_0369 + 2651192-2651862,2652103-2652158,2652816-2652874,265... 29 4.6
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079... 29 4.6
02_01_0394 + 2865316-2866359 29 4.6
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 28 6.0
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 28 8.0
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 28 8.0
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 28 8.0
>07_03_0057 +
12872946-12873152,12873371-12873421,12876335-12876480,
12876567-12876756
Length = 197
Score = 86.6 bits (205), Expect = 2e-17
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIF 675
+GG +VDYH CDFFPERWFD V V++ +N+ L+DRL +RGY G KL +NI+CEIF
Sbjct: 97 EGGILVDYHGCDFFPERWFDLVVVLQTDNSILHDRLTSRGYMGAKLTNNIECEIF 151
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/59 (45%), Positives = 37/59 (62%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNED 478
RT PNVLVTGTPG GK+T C LAD ++ ++ +E + D +D E +C +NED
Sbjct: 10 RTRPNVLVTGTPGTGKTTTCSLLADAVDLRHINIGDLVREKSLHDGWDEELECHIINED 68
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 272 TKYQIKMN-SGRTLPN--VLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEY 442
+K QI N SG P+ L+ G PG GK+TL + LA R + ++ I LDE+
Sbjct: 16 SKVQILENVSGIIKPSRITLLLGPPGCGKTTLLKALAGRLNKSLKETGEIEYNGVKLDEF 75
Query: 443 DPEYQCPFLNE 475
P ++++
Sbjct: 76 VPAKTSAYVSQ 86
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +2
Query: 272 TKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPE 451
T +++ N R + V V+G GVGK+TL RN V NI ++ NC D + E
Sbjct: 275 TDQELQKNDNRPIV-VSVSGKSGVGKTTLVRN-----------VYNIMKKKNCFDVHAME 322
Query: 452 YQCPFLNEDKLL 487
P L +L
Sbjct: 323 SFAPHLTAPNIL 334
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKL 484
L+ G PG GK+TL LA + I + +DE++P ++++ L
Sbjct: 78 LLLGPPGAGKTTLLLALAGNVPSGLKVSGQITYNGHTMDEFEPRRSAAYVSQHDL 132
>10_06_0112 +
10899079-10900656,10900761-10900920,10900948-10901028,
10901264-10901517
Length = 690
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -3
Query: 618 KSIIKRCIVAPYNKYTIKPPLREKITTVIVNYVSSFCIIPSIMSSNLSSFKNGH*YSGSY 439
KS++KRCI+ Y + + P+ EK + C P SN+ + H +G
Sbjct: 21 KSVLKRCIIGFYTRAIERLPVEEKPALLAAILDGGLCFGPLDPVSNIVANAIWHLSTGED 80
Query: 438 SSKQL 424
SS+ +
Sbjct: 81 SSEHV 85
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 284 IKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
I++ S RT N ++ G PGVGK+ + LA R
Sbjct: 274 IQILSRRTKNNPVLIGEPGVGKTAIAEGLAQR 305
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 227 QKLLEVILWYLS--SSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLA 373
+K LE ++ YL S FT+ K+ G +L+TG+PG GK+ L + +A
Sbjct: 337 KKELEEVVEYLKNPSKFTRLGGKLPKG-----ILLTGSPGTGKTLLAKAIA 382
>06_01_0067 +
561910-561987,562698-562759,564293-564338,564701-564758,
564892-565009,565130-565286,565611-565718,565884-565955,
566058-566174,566309-566404
Length = 303
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 299 GRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNED 478
G+ + V V G PG GK T C + + F ++ +E D +NE
Sbjct: 72 GKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEG 131
Query: 479 KLL 487
KL+
Sbjct: 132 KLV 134
>04_04_0251 +
23930789-23930960,23931065-23931128,23931641-23931747,
23931832-23931899,23932068-23932097,23932357-23932460,
23932558-23932662,23932815-23932904,23932982-23933057,
23933292-23933361,23933799-23933869,23933945-23934035,
23934192-23934319,23934547-23934675,23934762-23934902
Length = 481
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQ 418
VL+ G PG GK++LC+ LA + ++ ++ Q
Sbjct: 219 VLLHGPPGTGKTSLCKALAQKLSIRFKSRYSMCQ 252
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 284 IKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
+++ S RT N ++ G PGVGK+ + LA R
Sbjct: 194 VRILSRRTKNNPVLIGEPGVGKTAVVEGLAQR 225
>04_01_0063 - 630345-633743
Length = 1132
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 293 NSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
NSG PN V G PG+G+ R L+D
Sbjct: 628 NSGFVFPNTDVPGFPGIGELKSLRELSD 655
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RT N ++ G PGVGK+ + LA R
Sbjct: 351 RTKNNPVIIGEPGVGKTAIAEGLAQR 376
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDIME 499
L+ G PG GK+TL LA R + + + ++E+ PE ++++ D+
Sbjct: 194 LLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQH---DLHI 250
Query: 500 GMMQKEET 523
G M ET
Sbjct: 251 GEMTVRET 258
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDIME 499
L+ G PG GK+TL LA + + + + + +DE+ P+ ++++ D+
Sbjct: 233 LLLGPPGSGKTTLLLALAGKLEDNLKVSGKVTYNGHGMDEFVPQRTAAYISQH---DLHI 289
Query: 500 GMMQKEET 523
G M ET
Sbjct: 290 GEMTVRET 297
>01_01_1051 +
8290395-8290760,8291611-8291820,8292874-8292978,
8293040-8293048,8294426-8294539,8294632-8294796
Length = 322
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 487 GHYGRYDAKGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAAR-GYTGKKLEDNIQ 663
G G + GG I++ + P+ GV ++C + ++D+ A+ T ++DN+
Sbjct: 48 GGGGGEGSGGGRIIEARAGVMGPDSRRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVV 107
Query: 664 CEI 672
C++
Sbjct: 108 CQV 110
>06_01_0715 -
5193648-5193897,5193987-5194255,5195011-5195350,
5195691-5195845,5196547-5196557,5197632-5197689,
5197855-5198004,5198074-5198169,5198398-5198818,
5198835-5198950,5199041-5199149,5199483-5199532,
5200936-5201004,5201366-5201459,5201550-5201820,
5202273-5202607,5202718-5202786,5202834-5202904
Length = 977
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 365 NLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDIMEGMM 508
+L +TK W +++ I Q+H+ + E++ F + KL+D + G++
Sbjct: 386 DLLHKTKIRWDNINAILQQHS--GKIVEEFEVKFEFDSKLVDHLNGLV 431
>06_01_0369 +
2651192-2651862,2652103-2652158,2652816-2652874,
2653094-2653165,2653356-2653439,2654522-2654629,
2655543-2655605,2655733-2655813,2656316-2656421,
2657111-2657244,2657753-2657830,2658462-2658500,
2658673-2658755,2659228-2659300,2659842-2660012
Length = 625
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 257 LSSSFTKYQIKMNSGRTLPN--VLVTGTPGVGKSTLCRNLA 373
LS +F ++ G +P +LV G PGVGKS+L LA
Sbjct: 224 LSGNFGMEIARVLGGGVVPGSLILVGGDPGVGKSSLILQLA 264
>02_05_0449 -
29107310-29107377,29107732-29107777,29107860-29107934,
29108053-29108122,29108313-29108408,29108728-29108914,
29109001-29109169,29109614-29109646,29109731-29109841,
29110070-29111256,29112380-29112448,29114417-29114975,
29115455-29115589,29115714-29115896
Length = 995
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 311 PNVLVTGTPGVGKSTLCR 364
P+++ G PG GKS+LCR
Sbjct: 718 PHIIFKGPPGSGKSSLCR 735
>02_01_0394 + 2865316-2866359
Length = 347
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 523 IVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEI 672
+V S FF R+F + +RC+ + +DR A +TG +LE + E+
Sbjct: 278 LVHLGSSRFFVARFFQELVEVRCDFSQRFDRFAV--FTGVELERTSRGEL 325
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -3
Query: 552 EKITTVIVNYVSSFCIIPSIMSSNLSSFKNGH*YSGSYSSKQL---CSWAIFDTSLQANL 382
EK + N SF +I+ + S F + + S + CSWA S A
Sbjct: 1056 EKFDEIEANRRKSFEETTNIIKATTSIFNSASSSTPPTSPTPVLAKCSWAC-SNSASAYT 1114
Query: 381 VRSAKFLHNVDLPTPGV 331
SA HN+D+PTP V
Sbjct: 1115 TTSAS--HNIDVPTPTV 1129
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 423 CSWAIFDTSLQANLVRSAKFLHNVDLPTPGV 331
CSWA S A SA HN+D+PTP V
Sbjct: 669 CSWAC-SNSASAYTTTSAS--HNIDVPTPTV 696
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLA 373
+PN++++G PG GK+T +LA
Sbjct: 50 MPNLILSGPPGTGKTTSILSLA 71
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCR 364
+P + VTG G+GK+TL R
Sbjct: 215 IPTIAVTGAGGIGKTTLAR 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,277,722
Number of Sequences: 37544
Number of extensions: 345902
Number of successful extensions: 896
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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