Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00334
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13596| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_55825| Best HMM Match : Arch_fla_DE (HMM E-Value=2.9) 33 0.16
SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16) 33 0.16
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33) 31 0.66
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 31 0.87
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 30 1.5
SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10) 30 2.0
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12) 30 2.0
SB_4810| Best HMM Match : NACHT (HMM E-Value=1.4e-09) 30 2.0
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14) 29 2.7
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18015| Best HMM Match : NACHT (HMM E-Value=5) 29 2.7
SB_35763| Best HMM Match : DUF651 (HMM E-Value=0.26) 29 4.7
SB_52231| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_50930| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_11883| Best HMM Match : I-set (HMM E-Value=0) 28 6.2
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08) 28 8.1
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_13596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 103 bits (246), Expect = 2e-22
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = +1
Query: 514 GGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
GGN+VDYH C+FFPERWFD VFV+R NNT L+DRL RGYTGKKL N++CEIF TI
Sbjct: 8 GGNVVDYHGCEFFPERWFDIVFVLRTNNTILFDRLQQRGYTGKKLTSNVECEIFQTI 64
>SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDK 481
R+ PN+L+TGTPG GKST LA+R F + +V +A+E++ D +D +Y+C L+EDK
Sbjct: 6 RSRPNILITGTPGTGKSTTGVELANRLGFKYINVGQLAKENDLYDGWDAQYECHVLDEDK 65
Query: 482 LLDIME 499
++E
Sbjct: 66 ASLVVE 71
>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLAD 376
+T +VL+ G PGVGK+TLC+ L +
Sbjct: 335 KTKQHVLLEGNPGVGKTTLCKKLVN 359
>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3133
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
K + + + VL+ G PGVGK+TLC+ L +
Sbjct: 979 KSKTKKRMKRVLLEGNPGVGKTTLCKKLVN 1008
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
K + + + VL+ G PGVGK+TL + L +
Sbjct: 2465 KSKTKQPVKRVLLEGNPGVGKTTLLKKLVN 2494
>SB_55825| Best HMM Match : Arch_fla_DE (HMM E-Value=2.9)
Length = 208
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
K + + + VL+ G PGVGK+TLC+ L +
Sbjct: 166 KSKTKKRMKRVLLEGNPGVGKTTLCKKLVN 195
>SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16)
Length = 375
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLAD 376
+T +VL+ G PGVGK+TLC+ L +
Sbjct: 271 KTKQHVLLEGNPGVGKTTLCKKLVN 295
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 278 YQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVS 406
Y K +G VL+TG PG GK +C ++ + A +++S
Sbjct: 533 YLSKRVNGPPFVQVLLTGLPGTGKRAICMAVSSQLNLAVQEIS 575
>SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)
Length = 806
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
K S VL+ G PGVGKS+LC+ L +
Sbjct: 709 KSGSKSKTRRVLLEGNPGVGKSSLCKKLVN 738
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +2
Query: 239 EVILWYLSSSFTKY-QIKMNSGRTLPNVLVTGTPGVGKSTLC 361
+V+L L+++ T+ Q +M + + +VL+TG PG+GK+TLC
Sbjct: 29 DVVLRNLATNKTQVTQFEMAAYKK--HVLLTGPPGIGKTTLC 68
>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +2
Query: 323 VTGTPGVGKSTLCRNLAD-RTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKL---LD 490
V G G GKSTL LA RTKFA + E N L ++ + C + +D L L
Sbjct: 157 VLGPSGAGKSTLINVLAGYRTKFADGSIKVNGVERN-LRQF-RKMSCYIMQDDVLLPHLT 214
Query: 491 IMEGMM 508
+ME MM
Sbjct: 215 VMESMM 220
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 311 PNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLD 436
P V V G P VGKSTL + R +DV + ++ D
Sbjct: 22 PVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYD 63
>SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)
Length = 1037
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLA 373
+T+ +VL+ G GVGK+T C+ LA
Sbjct: 134 KTVRSVLLEGESGVGKTTFCQKLA 157
>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 314 NVLVTGTPGVGKSTLCRNL 370
NVLV G PG+GK+ +C L
Sbjct: 218 NVLVVGRPGIGKTMMCTRL 236
>SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12)
Length = 1356
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 314 NVLVTGTPGVGKSTLCRNL 370
NVLV G PG+GK+ +C L
Sbjct: 546 NVLVVGRPGIGKTMMCTRL 564
>SB_4810| Best HMM Match : NACHT (HMM E-Value=1.4e-09)
Length = 682
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 314 NVLVTGTPGVGKSTLCRNL 370
NVLV G PG+GK+ +C L
Sbjct: 265 NVLVVGRPGIGKTMMCTRL 283
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLA 373
+T+ +VL+ G G GK+TLC+ +A
Sbjct: 392 KTVRSVLLEGDSGAGKTTLCKKIA 415
>SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14)
Length = 696
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLA 373
+T+ +VL+ G G GK+TLC+ +A
Sbjct: 39 KTVRSVLLEGDSGAGKTTLCKKIA 62
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLA 373
+T+ +VL+ G G GK+TLC+ +A
Sbjct: 1493 KTVRSVLLEGDSGAGKTTLCKKIA 1516
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 227 QKLLEVILWYLSSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
Q L + +L S K + S T +L+ G PG+GK+T+ + L +
Sbjct: 283 QHLFKNLLIAEDGSVVKLCDLLESDNTKKRILLEGNPGIGKTTVSKKLVN 332
>SB_18015| Best HMM Match : NACHT (HMM E-Value=5)
Length = 166
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 227 QKLLEVILWYLSSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
Q L + +L S K + S T +L+ G PG+GK+T+ + L +
Sbjct: 36 QHLFKDLLIAEDGSVVKLCDLLESDNTKKRILLEGNPGIGKTTVSKKLVN 85
>SB_35763| Best HMM Match : DUF651 (HMM E-Value=0.26)
Length = 436
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLAD 376
R VL+ G PGVGK++ C+ L +
Sbjct: 400 RKTRRVLLEGNPGVGKTSFCKKLVN 424
>SB_52231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNI 412
K ++ R++ V G PGVGK+T ++ DR+ R + ++
Sbjct: 255 KKSTTRSVFQCYVFGPPGVGKTTFLQSFLDRSPEIKRSIRSL 296
>SB_50930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 130 ITKQSTNKC--NLNIVKRHKSSMIFDVIILSWFNHIYVL 20
I KQST C L+ V RH +M+ V ++ NH VL
Sbjct: 18 IHKQSTQLCPKRLHYVLRHSPNMLIAVFLMKISNHQLVL 56
>SB_11883| Best HMM Match : I-set (HMM E-Value=0)
Length = 616
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = -3
Query: 570 IKPPLREKITTVIVNYVSSFCIIPSIMSSNLSSFKNGH*YSGSYSSKQLCSWAIFDTSLQ 391
I L + +TT+ N VS C + S LS +K+G + S++ L + + D+ L
Sbjct: 426 ISTDLGKNVTTLSGNTVSLLCNATGVPSPKLSWYKDGETLNVSHAVLTLPTLSPSDSGLY 485
Query: 390 ANLVRSAKFLHNVD 349
R+ K + + D
Sbjct: 486 RCEARNLKGVDDAD 499
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLA 373
VL+ G G GK+TLC+ LA
Sbjct: 375 VLIEGESGAGKTTLCQKLA 393
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLA 373
VL+ G G GK+TLC+ LA
Sbjct: 1777 VLIEGESGAGKTTLCQKLA 1795
>SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)
Length = 833
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNL 370
VLV G PG GK+T+C+ L
Sbjct: 59 VLVEGGPGSGKTTMCQRL 76
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 78 LCLFTIFKLHLFVDCFVIINYYFATVSNFLFYF 176
L F IF+ VDC ++ + F SN++F F
Sbjct: 880 LAEFNIFEFEKCVDCSLLFSLAFDLTSNYVFTF 912
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,759,524
Number of Sequences: 59808
Number of extensions: 421829
Number of successful extensions: 1070
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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