Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00334
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007426-1|AAH07426.1| 172|Homo sapiens TAF9 RNA polymerase II,... 89 1e-17
BC007349-1|AAH07349.1| 172|Homo sapiens TAF9 RNA polymerase II,... 89 1e-17
AJ878881-1|CAI48031.1| 172|Homo sapiens coilin-interacting nulc... 89 1e-17
AJ878880-1|CAI48030.1| 172|Homo sapiens coilin-interacting nucl... 89 1e-17
AF151895-1|AAD34132.1| 172|Homo sapiens CGI-137 protein protein. 89 1e-17
AF110777-1|AAF14860.1| 172|Homo sapiens adrenal gland protein A... 89 1e-17
BX276089-1|CAI16432.1| 311|Homo sapiens katanin p60 (ATPase-con... 32 2.2
BC050428-1|AAH50428.1| 311|Homo sapiens KATNA1 protein protein. 32 2.2
AL078581-1|CAI19504.1| 311|Homo sapiens katanin p60 (ATPase-con... 32 2.2
BC128156-1|AAI28157.1| 272|Homo sapiens TRIT1 protein protein. 31 3.8
BC128155-1|AAI28156.1| 467|Homo sapiens tRNA isopentenyltransfe... 31 3.8
BC107569-1|AAI07570.1| 467|Homo sapiens tRNA isopentenyltransfe... 31 3.8
BC010741-1|AAH10741.2| 379|Homo sapiens TRIT1 protein protein. 31 3.8
AY303390-1|AAP60111.1| 467|Homo sapiens tRNA isopentenyl transf... 31 3.8
AY052768-1|AAL14107.1| 435|Homo sapiens tRNA isopentenyl transf... 31 3.8
AL033527-6|CAI19405.1| 467|Homo sapiens tRNA isopentenyltransfe... 31 3.8
AL033527-5|CAI19404.1| 379|Homo sapiens tRNA isopentenyltransfe... 31 3.8
AL033527-4|CAI19406.1| 441|Homo sapiens tRNA isopentenyltransfe... 31 3.8
AK223478-1|BAD97198.1| 467|Homo sapiens tRNA isopentenyltransfe... 31 3.8
AF074918-1|AAG31324.1| 467|Homo sapiens tRNA isopentenylpyropho... 31 3.8
U13052-1|AAC50067.1| 296|Homo sapiens kir protein. 30 8.9
U10550-1|AAA64911.1| 296|Homo sapiens Gem protein. 30 8.9
BC022010-1|AAH22010.1| 296|Homo sapiens GTP binding protein ove... 30 8.9
>BC007426-1|AAH07426.1| 172|Homo sapiens TAF9 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 32kDa
protein.
Length = 172
Score = 89.4 bits (212), Expect = 1e-17
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
+GG IVDYH CDFFPERWF VFV+R + LY+RL RGY KKL DNIQCEIF +
Sbjct: 71 EGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVL 128
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLL 487
LPN+L+TGTPGVGK+TL + LA ++ + +V ++A+E D YD EY CP L+ED+++
Sbjct: 3 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 62
Query: 488 DIMEGMMQK 514
D ++ M++
Sbjct: 63 DELDNQMRE 71
>BC007349-1|AAH07349.1| 172|Homo sapiens TAF9 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 32kDa
protein.
Length = 172
Score = 89.4 bits (212), Expect = 1e-17
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
+GG IVDYH CDFFPERWF VFV+R + LY+RL RGY KKL DNIQCEIF +
Sbjct: 71 EGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVL 128
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLL 487
LPN+L+TGTPGVGK+TL + LA ++ + +V ++A+E D YD EY CP L+ED+++
Sbjct: 3 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 62
Query: 488 DIMEGMMQK 514
D ++ M++
Sbjct: 63 DELDNQMRE 71
>AJ878881-1|CAI48031.1| 172|Homo sapiens coilin-interacting nulcear
ATPase protein protein.
Length = 172
Score = 89.4 bits (212), Expect = 1e-17
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
+GG IVDYH CDFFPERWF VFV+R + LY+RL RGY KKL DNIQCEIF +
Sbjct: 71 EGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVL 128
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLL 487
LPN+L+TGTPGVGK+TL + LA ++ + +V ++A+E D YD EY CP L+ED+++
Sbjct: 3 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 62
Query: 488 DIMEGMMQK 514
D ++ M++
Sbjct: 63 DELDNQMRE 71
>AJ878880-1|CAI48030.1| 172|Homo sapiens coilin-interacting nuclear
ATPase protein protein.
Length = 172
Score = 89.4 bits (212), Expect = 1e-17
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
+GG IVDYH CDFFPERWF VFV+R + LY+RL RGY KKL DNIQCEIF +
Sbjct: 71 EGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVL 128
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLL 487
LPN+L+TGTPGVGK+TL + LA ++ + +V ++A+E D YD EY CP L+ED+++
Sbjct: 3 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 62
Query: 488 DIMEGMMQK 514
D ++ M++
Sbjct: 63 DELDNQMRE 71
>AF151895-1|AAD34132.1| 172|Homo sapiens CGI-137 protein protein.
Length = 172
Score = 89.4 bits (212), Expect = 1e-17
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
+GG IVDYH CDFFPERWF VFV+R + LY+RL RGY KKL DNIQCEIF +
Sbjct: 71 EGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVL 128
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLL 487
LPN+L+TGTPGVGK+TL + LA ++ + +V ++A+E D YD EY CP L+ED+++
Sbjct: 3 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 62
Query: 488 DIMEGMMQK 514
D ++ M++
Sbjct: 63 DELDNQMRE 71
>AF110777-1|AAF14860.1| 172|Homo sapiens adrenal gland protein
AD-004 protein.
Length = 172
Score = 89.4 bits (212), Expect = 1e-17
Identities = 38/58 (65%), Positives = 43/58 (74%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
+GG IVDYH CDFFPERWF VFV+R + LY+RL RGY KKL DNIQCEIF +
Sbjct: 71 EGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVL 128
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLL 487
LPN+L+TGTPGVGK+TL + LA ++ + +V ++A+E D YD EY CP L+ED+++
Sbjct: 3 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 62
Query: 488 DIMEGMMQK 514
D ++ M++
Sbjct: 63 DELDNQMRE 71
>BX276089-1|CAI16432.1| 311|Homo sapiens katanin p60
(ATPase-containing) subunit A 1 protein.
Length = 311
Score = 31.9 bits (69), Expect = 2.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSN 409
+ N GR VL+ G PG GK+ L + +A K + +VS+
Sbjct: 159 EQNKGREEKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 199
>BC050428-1|AAH50428.1| 311|Homo sapiens KATNA1 protein protein.
Length = 311
Score = 31.9 bits (69), Expect = 2.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSN 409
+ N GR VL+ G PG GK+ L + +A K + +VS+
Sbjct: 159 EQNKGREEKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 199
>AL078581-1|CAI19504.1| 311|Homo sapiens katanin p60
(ATPase-containing) subunit A 1 protein.
Length = 311
Score = 31.9 bits (69), Expect = 2.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSN 409
+ N GR VL+ G PG GK+ L + +A K + +VS+
Sbjct: 159 EQNKGREEKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSS 199
>BC128156-1|AAI28157.1| 272|Homo sapiens TRIT1 protein protein.
Length = 272
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 21 RTLPLVVILGATGTGKSTLALQLGQR 46
>BC128155-1|AAI28156.1| 467|Homo sapiens tRNA
isopentenyltransferase 1 protein.
Length = 467
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 21 RTLPLVVILGATGTGKSTLALQLGQR 46
>BC107569-1|AAI07570.1| 467|Homo sapiens tRNA
isopentenyltransferase 1 protein.
Length = 467
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 21 RTLPLVVILGATGTGKSTLALQLGQR 46
>BC010741-1|AAH10741.2| 379|Homo sapiens TRIT1 protein protein.
Length = 379
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 15 RTLPLVVILGATGTGKSTLALQLGQR 40
>AY303390-1|AAP60111.1| 467|Homo sapiens tRNA isopentenyl
transferase protein.
Length = 467
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 21 RTLPLVVILGATGTGKSTLALQLGQR 46
>AY052768-1|AAL14107.1| 435|Homo sapiens tRNA isopentenyl
transferase protein.
Length = 435
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 15 RTLPLVVILGATGTGKSTLALQLGQR 40
>AL033527-6|CAI19405.1| 467|Homo sapiens tRNA
isopentenyltransferase 1 protein.
Length = 467
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 21 RTLPLVVILGATGTGKSTLALQLGQR 46
>AL033527-5|CAI19404.1| 379|Homo sapiens tRNA
isopentenyltransferase 1 protein.
Length = 379
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 15 RTLPLVVILGATGTGKSTLALQLGQR 40
>AL033527-4|CAI19406.1| 441|Homo sapiens tRNA
isopentenyltransferase 1 protein.
Length = 441
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 21 RTLPLVVILGATGTGKSTLALQLGQR 46
>AK223478-1|BAD97198.1| 467|Homo sapiens tRNA
isopentenyltransferase 1 variant protein.
Length = 467
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 21 RTLPLVVILGATGTGKSTLALQLGQR 46
>AF074918-1|AAG31324.1| 467|Homo sapiens tRNA
isopentenylpyrophosphate transferase protein.
Length = 467
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RTLP V++ G G GKSTL L R
Sbjct: 21 RTLPLVVILGATGTGKSTLALQLGQR 46
>U13052-1|AAC50067.1| 296|Homo sapiens kir protein.
Length = 296
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 260 SSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLA 373
SS T I SG T V++ G GVGKSTL A
Sbjct: 59 SSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFA 96
>U10550-1|AAA64911.1| 296|Homo sapiens Gem protein.
Length = 296
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 260 SSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLA 373
SS T I SG T V++ G GVGKSTL A
Sbjct: 59 SSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFA 96
>BC022010-1|AAH22010.1| 296|Homo sapiens GTP binding protein
overexpressed in skeletal muscle protein.
Length = 296
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 260 SSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLA 373
SS T I SG T V++ G GVGKSTL A
Sbjct: 59 SSDSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFA 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,217,301
Number of Sequences: 237096
Number of extensions: 1946926
Number of successful extensions: 4265
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4265
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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