Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00334
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 87 8e-18
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical pr... 31 0.58
U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical pr... 31 0.58
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 31 0.77
AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical ... 30 1.3
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 29 4.1
Z99281-23|CAE18026.1| 302|Caenorhabditis elegans Hypothetical p... 28 7.2
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 27 9.5
AF022971-9|AAG23978.2| 345|Caenorhabditis elegans Serpentine re... 27 9.5
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 87.4 bits (207), Expect = 8e-18
Identities = 34/58 (58%), Positives = 45/58 (77%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIFATI 684
+GG +VDYH CD FPERWFD V V+RC LYDRL +RGY+ K+++N++CEIF T+
Sbjct: 79 EGGIVVDYHGCDLFPERWFDVVVVLRCPTEKLYDRLQSRGYSEFKIKENVECEIFGTL 136
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/73 (42%), Positives = 48/73 (65%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDK 481
R PN+LVTG+PG GKSTL + +A++ F + +VS +E+N ++D +Y C L+EDK
Sbjct: 7 RRRPNILVTGSPGTGKSTLGQQVAEKLGFVFIEVSKEVRENNLQGDFDEQYNCHVLDEDK 66
Query: 482 LLDIMEGMMQKEE 520
LLD + + +E
Sbjct: 67 LLDHISDRLDSDE 79
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLADRTKFAWRD 400
+L+TG PG GK++LC+ LA D
Sbjct: 175 ILLTGPPGTGKTSLCKGLAQHLSIRMND 202
>Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical
protein T28F3.6 protein.
Length = 252
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 251 WYLSSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
W L ++ M + + +LV G P GK+TLC LAD
Sbjct: 9 WALWLILSEMASDMQEDKKVAKILVLGPPKAGKTTLCTFLAD 50
>U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical
protein B0207.6 protein.
Length = 268
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLAD 376
VLV G PG GKST C L D
Sbjct: 4 VLVIGAPGAGKSTFCAGLTD 23
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDE 439
K RTLP++L G PG GK+T A R ++ ++++ E N DE
Sbjct: 55 KFIENRTLPHLLFYGPPGTGKTTTVL-AAARQMYSPTKMASMVLELNASDE 104
>AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical
protein K07H8.8 protein.
Length = 347
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 621 CKSIIKRCIVAPYNKYTIKPPLREKIT--TVIVNYVSSFCIIPSIMSS 484
C ++ C P+N+ T PP + + T+ Y S C+IP ++S+
Sbjct: 82 CNDVLAECNNIPFNQ-TFVPPFYDYLQDFTISPRYDISLCLIPKVVST 128
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 245 ILWYLSSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 376
+L S +T + +TL L+TG G+GK++L R +AD
Sbjct: 417 VLILFQSGYTDLTFHLPRNKTL---LITGDSGIGKTSLMRVIAD 457
>Z99281-23|CAE18026.1| 302|Caenorhabditis elegans Hypothetical
protein Y57G11C.43 protein.
Length = 302
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQE 421
+P ++VTG P GKST+ LA + + +D I E
Sbjct: 1 MPLIIVTGHPSSGKSTVVDRLAKKFEEKGKDYLIIRDE 38
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +2
Query: 299 GRTLPNVLVTGTPGVGKST----LCRNLADRTKF 388
GR LP++L G PG GK++ CR L + F
Sbjct: 45 GRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIF 78
>AF022971-9|AAG23978.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein38 protein.
Length = 345
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 203 YFLIVINGSKIEQKVRNSCEIIIDYYKTIHK 111
Y+L+ + G K+ QK+ N+ I+++ TI +
Sbjct: 308 YYLMELLGIKLRQKISNASTILVEKVNTISR 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,199
Number of Sequences: 27780
Number of extensions: 340439
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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