Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00334
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.51 
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    24   1.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   8.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   8.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   8.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 535 DSQLCFLLLHHTFHNVQQLIFI 470
           D+Q+C +++    H  Q L+FI
Sbjct: 142 DTQICSMMIESLSHTTQDLVFI 163


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 405 DTSLQANLVRSAKFLHNVDLPTPG 334
           DTS  A+LVR+A    N+D P  G
Sbjct: 38  DTSHFASLVRNASVSGNLDAPEGG 61


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 264 DERYHKITSNNF 229
           DE +H++TSN F
Sbjct: 221 DESFHRLTSNTF 232


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 481 LIFIQKRALIFRIIFIQAIVFL 416
           LIF + RA  F  +FI  I+ +
Sbjct: 294 LIFTRDRAFYFTTVFIPGIILV 315


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 481 LIFIQKRALIFRIIFIQAIVFL 416
           LIF + RA  F  +FI  I+ +
Sbjct: 263 LIFTRDRAFYFTTVFIPGIILV 284


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 481 LIFIQKRALIFRIIFIQAIVFL 416
           LIF + RA  F  +FI  I+ +
Sbjct: 314 LIFTRDRAFYFTTVFIPGIILV 335


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 481 LIFIQKRALIFRIIFIQAIVFL 416
           LIF + RA  F  +FI  I+ +
Sbjct: 263 LIFTRDRAFYFTTVFIPGIILV 284


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 375 TELNSLGGMYQISPKNTIAWMNMILNIN 458
           +E+N   G+Y    K+T+ W    L ++
Sbjct: 7   SEINPKEGLYDEGGKHTVHWFRKGLRLH 34


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 260 SSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTL 358
           S+  T Y+I  +S   L  VL TGT G+G +T+
Sbjct: 125 SAITTAYRIHADSCDRLW-VLDTGTIGIGNTTI 156


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 377 RTKFAWRDVSNIAQEHNCLDEYD 445
           R++  W   +N     NC++ YD
Sbjct: 93  RSELPWGSCNNYWNTKNCVNPYD 115


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 264 DERYHKITSNNF 229
           D+ +H++TSN F
Sbjct: 223 DDSFHRLTSNTF 234


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 264 DERYHKITSNNF 229
           D+ +H++TSN F
Sbjct: 220 DDSFHRLTSNTF 231


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 264 DERYHKITSNNF 229
           D+ +H++TSN F
Sbjct: 220 DDSFHRLTSNTF 231


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 264 DERYHKITSNNF 229
           D+ +H++TSN F
Sbjct: 220 DDSFHRLTSNTF 231


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 264 DERYHKITSNNF 229
           D+ +H++TSN F
Sbjct: 218 DDSFHRLTSNTF 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,886
Number of Sequences: 438
Number of extensions: 4740
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)