Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00334
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 67 1e-11
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 35 0.058
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 31 0.95
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 31 0.95
At3g10420.1 68416.m01249 sporulation protein-related similar to ... 31 0.95
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 30 1.3
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 30 1.3
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.3
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 30 1.7
At3g59710.1 68416.m06662 short-chain dehydrogenase/reductase (SD... 30 1.7
At5g66130.1 68418.m08331 cell cycle checkpoint protein-related w... 29 2.2
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 29 2.2
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 29 2.2
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 29 2.9
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 29 2.9
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 29 2.9
At5g66005.2 68418.m08311 Expressed protein 29 3.8
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 29 3.8
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 29 3.8
At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR ... 29 3.8
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.0
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.0
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.0
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 5.0
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 28 5.0
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 28 6.7
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 28 6.7
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 6.7
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 28 6.7
At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 / ad... 28 6.7
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 27 8.8
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR... 27 8.8
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 27 8.8
At3g48090.1 68416.m05243 disease resistance protein (EDS1) ident... 27 8.8
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 27 8.8
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 66.9 bits (156), Expect = 1e-11
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +1
Query: 511 KGGNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRL 618
+GGNIVDYH CDFFP+RWFD V V+R N+ LYDRL
Sbjct: 81 EGGNIVDYHGCDFFPQRWFDRVVVLRTENSVLYDRL 116
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDK 481
R PN+L+TGTPG GKST LA+ T + + ++ +E +D E +C F+NED
Sbjct: 11 RERPNLLITGTPGTGKSTTASALAEATNLRYICIGDLVKEKEFYHGWDNELECHFINEDS 70
Query: 482 LLDIMEGMM 508
++D ++ M
Sbjct: 71 VIDELDDAM 79
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNE 475
L+ G PG GKSTL + L+ +T+ R + + L E+ PE ++++
Sbjct: 176 LLLGPPGSGKSTLLKALSGKTETGLRSTGKVTYNGHELHEFVPERTAGYIDQ 227
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKL 484
L+ G PG GK+TL + L+ R + + ++ L E+ PE +++++ L
Sbjct: 168 LLLGPPGCGKTTLLQALSGRLSHSVKVGGKVSYNGCLLSEFIPEKTSSYISQNDL 222
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 30.7 bits (66), Expect = 0.95
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 314 NVLVTGTPGVGKSTLCRNLA 373
++LV G+PGVGK+TL R +A
Sbjct: 215 SILVIGSPGVGKTTLIREIA 234
>At3g10420.1 68416.m01249 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 547
Score = 30.7 bits (66), Expect = 0.95
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 314 NVLVTGTPGVGKSTLCRNLA 373
++LV G+PGVGK+TL R +A
Sbjct: 215 SILVIGSPGVGKTTLIREIA 234
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 224 KQKLLEVILWYLS-SSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLA 373
KQ+L EV+ + + S FT+ K+ G +L+TG PG GK+ L + +A
Sbjct: 371 KQELEEVVEYLKNPSKFTRLGGKLPKG-----ILLTGAPGTGKTLLAKAIA 416
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 221 LKQKLLEVILWYLSSS--FTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
LKQ+LL Y +S+ FT+ + N +L+ G PG GK++LC+ LA +
Sbjct: 175 LKQRLLR----YAASALLFTQKGVNPNLVSWNRIILLHGPPGTGKTSLCKALAQK 225
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDIME 499
L+ G P GK+TL LA + + + + + L+E+ P+ +++++ D+
Sbjct: 177 LLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQN---DVHV 233
Query: 500 GMMQKEET 523
G+M +ET
Sbjct: 234 GVMTVQET 241
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 284 IKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
I++ S RT N ++ G PGVGK+ + LA R
Sbjct: 267 IQILSRRTKNNPVLIGEPGVGKTAISEGLAQR 298
>At3g59710.1 68416.m06662 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 302
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 550 FPERWFDGVFVIRCNNTTLYDRLAARGYTGKKLEDNIQCEIF 675
+PE W D + I Y R+ AR Y GKKL N C F
Sbjct: 213 WPENWPD--YAISKLALNAYSRVLARRYDGKKLSVNCLCPGF 252
>At5g66130.1 68418.m08331 cell cycle checkpoint protein-related weak
similarity to cell cycle checkpoint protein RAD17 [Homo
sapiens] GI:4102916
Length = 599
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 224 KQKLLEVILWYLSS-SFTKYQIKMNSGRTLPNVLVTGTPGVGKST---LCRNLADRTKFA 391
K+K+ EV LW+ S F K ++ N +LVTG GVGKS L ++ T
Sbjct: 109 KKKVDEVKLWFQESLDFLKNGLRNNV------LLVTGQAGVGKSATIHLITSILGVTVHE 162
Query: 392 WR-DVSNIAQEH 424
W + I QEH
Sbjct: 163 WNAPIPTIWQEH 174
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 284 IKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
I++ S RT N ++ G PGVGK+ + LA R
Sbjct: 157 IEVLSRRTKNNPVLIGEPGVGKTAVVEGLAQR 188
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 284 IKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
+++ S RT N ++ G PGVGK+ + LA R
Sbjct: 192 VRILSRRTKNNPVLIGEPGVGKTAVVEGLAQR 223
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 287 KMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKF 388
K+N + VL++GTPG+GK+T + ++ F
Sbjct: 386 KLNDAGSKKAVLLSGTPGIGKTTSAKLVSQMLGF 419
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +2
Query: 323 VTGTPGVGKSTLCRNLADRTK-----FAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDK 481
+ G PG+GK+T+ R L D+ A+ D + C E + F+N+D+
Sbjct: 219 IVGPPGIGKTTIARALRDQISENFQLTAFIDDIRLTYPRRCYGESGLKPPTAFMNDDR 276
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RT N ++ G PGVGK+ + LA R
Sbjct: 278 RTKNNPVIIGEPGVGKTAIAEGLAQR 303
>At5g66005.2 68418.m08311 Expressed protein
Length = 164
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLAD 376
+LVTG PGVGK+TL + D
Sbjct: 8 LLVTGPPGVGKTTLIMRVLD 27
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKL 484
L+ G PG GK+TL L+ R + + ++ + E+ PE +++++ L
Sbjct: 166 LLLGPPGCGKTTLLLALSGRLDPSLKTRGEVSYNGHLFSEFVPEKTSSYVSQNDL 220
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDIME 499
L+ G P GK+TL LA + + + +I LDE+ P +++++ D+
Sbjct: 201 LLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQN---DLHV 257
Query: 500 GMMQKEET 523
G+M +ET
Sbjct: 258 GIMTVKET 265
>At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR
class), putative similar to diesease resistance protein
rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631
Length = 1138
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLADR-------TKFAWRDVS------NIAQEHNCLDEYDPEYQ 457
V +TG G+GK+TL R + + K AW VS N+ Q N L + P+ +
Sbjct: 185 VSITGMGGLGKTTLARQVFNHDMVTKKFDKLAWVSVSQDFTLKNVWQ--NILGDLKPKEE 242
Query: 458 CPFLNEDKLLDIMEGMMQKE 517
E K+L++ E +Q+E
Sbjct: 243 ETKEEEKKILEMTEYTLQRE 262
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 221 VRSLCYYFLIVINGSKIEQKVRNSCEIIIDYYKTI 117
V LCY +V K K RN CE++ + KT+
Sbjct: 252 VEVLCYRLFLVQKLLKSSTKYRNLCEVVDEAVKTL 286
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 221 VRSLCYYFLIVINGSKIEQKVRNSCEIIIDYYKTI 117
V LCY +V K K RN CE++ + KT+
Sbjct: 252 VEVLCYRLFLVQKLLKSSTKYRNLCEVVDEAVKTL 286
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 221 VRSLCYYFLIVINGSKIEQKVRNSCEIIIDYYKTI 117
V LCY +V K K RN CE++ + KT+
Sbjct: 235 VEVLCYRLFLVQKLLKSSTKYRNLCEVVDEAVKTL 269
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 357 NVDLPTPGVPVTKTFGRVRPEFIFI*YLVKLDERYHKITSNNFCFS 220
N+ LP+P P++ T +F+F +L+ L +T+ CFS
Sbjct: 247 NITLPSPPPPLSLTPPHEAKDFVFTNFLIFLIS-LDSVTAQEICFS 291
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 257 LSSSFTKYQIKMNSGRTLPNVL-VTGTPGVGKSTLCRNLADRTK 385
LS + + K++ R ++ V G PG+GK+TL + L D K
Sbjct: 223 LSQRLKELKEKLDLSRKETRIVGVLGMPGIGKTTLVKRLYDEWK 266
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 320 LVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKL 484
L+ G PG GK+TL + L+ + + + + L E+ PE +++++ L
Sbjct: 171 LLLGPPGCGKTTLLQALSGKFSDSVKVGGEVCYNGCSLSEFIPEKTSSYISQNDL 225
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 257 LSSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLA 373
+ SS K + R VL+ G PG GK++L R A
Sbjct: 401 IDSSSIKNSLSSLGLRPTKGVLIHGPPGTGKTSLARTFA 439
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 284 IKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
+++ + RT N + G PGVGK+ + LA R
Sbjct: 308 VQILARRTKNNPCLIGEPGVGKTAIAEGLAQR 339
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 329 GTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPE 451
GTPG ++ + L + + AWR VSN+ +++ ++PE
Sbjct: 269 GTPGHRRTNSFQRLKTQMQKAWRGVSNLREDNR--PTFNPE 307
>At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 /
adenylate dimethylallyltransferase / cytokinin synthase
(IPT6) identical to adenylate isopentenyltransferase
(IPT6) [Arabidopsis thaliana] GI:14279064
Length = 342
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 317 VLVTGTPGVGKSTLCRNLADR 379
VL+TGT G GKS L +LA R
Sbjct: 48 VLITGTTGTGKSRLSVDLATR 68
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 302 RTLPNVLVTGTPGVGKSTLCRNLADR 379
RT N + G PGVGK+ + LA R
Sbjct: 293 RTKNNPCLIGEPGVGKTAIAEGLAQR 318
>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1197
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 281 QIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 379
+++ S T + V G PG+GK+TL L ++
Sbjct: 217 KLRFGSDETTRTIGVVGMPGIGKTTLATMLYEK 249
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Frame = +2
Query: 323 VTGTPGVGKSTLCRNLAD--RTKF----AWRDVSNIAQEH--NCL 433
V G PG+GK+TL R + + R KF +D+ ++EH +CL
Sbjct: 235 VVGMPGIGKTTLAREIYETLRCKFLRHGLIQDIRRTSKEHGLDCL 279
>At3g48090.1 68416.m05243 disease resistance protein (EDS1)
identical to disease resistance protein/lipase homolog
EDS1 GI:4454567; contains Pfam profile PF01764: Lipase
Length = 623
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 555 REKITTVIVNYVSSFCIIPSIMSSNLSS 472
REK + VN+VS F I+P IM + +S
Sbjct: 172 REKWSRFFVNFVSRFDIVPRIMLARKAS 199
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 308 LPNVLVTGTPGVGKSTLCRNLADRTK 385
LP+++ G PG GK+++ ++L + +K
Sbjct: 137 LPSIVFWGPPGTGKTSIAKSLINSSK 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,593,102
Number of Sequences: 28952
Number of extensions: 302108
Number of successful extensions: 963
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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