Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00333
         (815 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004CFA78 Cluster: WD repeat protein 49.; n=2; Tetr...    34   3.7  

>UniRef50_UPI00004CFA78 Cluster: WD repeat protein 49.; n=2;
           Tetrapoda|Rep: WD repeat protein 49. - Xenopus
           tropicalis
          Length = 690

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = -2

Query: 682 FEISVPTFGVSGTPSKII---FFSGN*NTLAYLK*DSMTGFSVVSGIR-PRDASSKYKSI 515
           + IS PT  + G  + +I   FF+G     ++ K D ++   +   +   R ASSK +S 
Sbjct: 49  YVISKPTGILQGNMASVITVQFFTGRKQLFSFSK-DKVSSSKIFGTLSLARVASSKSRSN 107

Query: 514 NCDYCCSVPSYRFPSRPALVQFFLNR 437
              +CC+   +R  SR A++ F  N+
Sbjct: 108 ASVFCCTSKCFRSVSRAAILHFSRNQ 133


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,752,621
Number of Sequences: 1657284
Number of extensions: 14014535
Number of successful extensions: 34286
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 33103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34284
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)