Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00333
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    29   0.79 
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    27   4.2  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   7.4  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   7.4  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   7.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.7  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   9.7  

>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 653 FWYTIKNY-IFQWQLKYFGIFKMRFYDW 573
           F  +I NY + Q++L+YF +F ++ YD+
Sbjct: 130 FSESISNYLVLQYKLRYFPVFDLKIYDF 157


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -2

Query: 298 FNRSRTKPYDHF*IYSLACLLIGFFSTTVPFELLLVLCNSASPFIASVDIAKIKQTLF*L 119
           F    T P   F IY++ CL I F  T+         C + +P +++ ++ K ++ +  L
Sbjct: 118 FTVKPTIPTTSFKIYAIGCLFIAFKLTSDYSVAKKSFCENLAPSLSTKNLEKYEKIVLAL 177

Query: 118 M 116
           +
Sbjct: 178 L 178


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 288 HVQNRMTTFEFTVWHAC 238
           HVQN +  FE  +W AC
Sbjct: 460 HVQNNLKAFEEKLWAAC 476


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 273 YGFVRDRLNGSFKPYVENTPRRNRPSRKGS 362
           Y F+R  + G FKP  E    +  P  K +
Sbjct: 751 YSFIRTSMKGGFKPAGETADDKPEPQTKNA 780


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 203 TVTRFM*LCISFYCICRYCENKTNFVLTDDFNVRIVNMCLLSVFGWLVL 57
           T+T++M L   +  I  YC + +  +  D+FN +  N+   +++  LVL
Sbjct: 43  TITKYMEL---YTAIHNYCADASKTITVDNFNDQTANVLGEALYNNLVL 88


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 415  RSQSLQRSRLALFSRLRVLPLREGRFLLGVF 323
            + ++L+R  + +F RL  L   +GRF+ G+F
Sbjct: 1514 KQKALRRYCMEIFERLYNLQSEDGRFVNGLF 1544


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 72  KYRQQTHIYDPHIEIIS*NKVCFIFAISTDA 164
           KY   T +Y PHI++    ++   F   TDA
Sbjct: 66  KYAMATGVYKPHIKVFDFAEMSLKFERHTDA 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,455
Number of Sequences: 5004
Number of extensions: 64489
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)