Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00333
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0086 - 699617-699766,699851-699908,699998-700068,700210-70...    29   3.3  

>03_01_0086 -
           699617-699766,699851-699908,699998-700068,700210-700286,
           700384-700466,700545-700604,700848-700983,701056-701126,
           701248-701339,701454-701551,701891-702043,702146-702311,
           702457-702885,703076-703157,703245-703504
          Length = 661

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 701 SGIATAV*DFCSDFWCFWY-TIKNYIFQWQLKYFGIFKMRFYDWFLS 564
           SG A    DFC   W  W   ++ YI QW+ K+         DW  S
Sbjct: 405 SGFAFDEDDFCRP-WEGWQDNLERYILQWESKHIIAVSTAIQDWLTS 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,959,282
Number of Sequences: 37544
Number of extensions: 355570
Number of successful extensions: 828
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)