Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00333
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)                   29   3.4  
SB_18998| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1e-10)         29   6.0  

>SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)
          Length = 228

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 180 ELHKTSNSSNGTVVEKKPISR 242
           ELH T+ S++GTV  +KP SR
Sbjct: 123 ELHTTTKSTDGTVARRKPKSR 143


>SB_18998| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1e-10)
          Length = 422

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 540 SLGRIPDTTEKPVIESHFKYAKVFQLPLKNIIFDGVPETPKVGTEISN 683
           S+ RIPD+   P++       K+ + P+ NI+  G    P +  E  N
Sbjct: 112 SVYRIPDSNVDPLVALDGALCKLVKNPIPNILITGDLNLPSISWEDDN 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,298,388
Number of Sequences: 59808
Number of extensions: 462237
Number of successful extensions: 1035
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)