Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00333
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    31   0.75 

>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 13/55 (23%), Positives = 32/55 (58%)
 Frame = +3

Query: 63  QPSKYRQQTHIYDPHIEIIS*NKVCFIFAISTDAIKGDAELHKTSNSSNGTVVEK 227
           +P  + QQ    +P   ++  N   F+  +++DA + ++++H+ + S + TV+E+
Sbjct: 112 RPPSFEQQQQNQNPDPPLLMGNNGTFVQEVASDAYQPNSDMHQLNFSFHRTVIEE 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,579,907
Number of Sequences: 27780
Number of extensions: 358746
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)