Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00333
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    25   0.84 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.8  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -2

Query: 676 ISVPTFGVSGTPSKIIFFSGN*NTLAYLK*DSMTGFSVVSGIRP 545
           I  P FGV G  S IIF +      AY    S TG + +S +RP
Sbjct: 8   IYAPFFGVMGAASAIIFSALG---AAYGTAKSGTGIAAMSVMRP 48


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 424 KDPTTDSEKTEPMPVYWESDKKELN 498
           + P T   K+EPM V++ S ++EL+
Sbjct: 578 RGPVTMKGKSEPMNVWFLSRERELS 602


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 424 KDPTTDSEKTEPMPVYWESDKKELN 498
           + P T   K+EPM V++ S ++EL+
Sbjct: 578 RGPVTMKGKSEPMNVWFLSRERELS 602


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 6/24 (25%), Positives = 13/24 (54%)
 Frame = +1

Query: 493 LNNNNRSLSIYIWKTHLWAEYRTQ 564
           +N  N+ +   +W   +W +Y+ Q
Sbjct: 66  VNEKNQIMKSNVWLRFIWTDYQLQ 89


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 463 ALVQFFLNRSLDLFPLRSQSLQRSRLALFSRLRVLPLREGRFLLGVFSTYGLKLPFNRSR 284
           AL +F + + LDL       LQ S ++     R + + +G+ +    STY  K+   ++ 
Sbjct: 276 ALGEFVVVKVLDLRSQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDSTYIPKVKNKKAG 335

Query: 283 TK 278
           +K
Sbjct: 336 SK 337


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 490 ELNNNNRSLSIYIWKTHLWAEYRTQ 564
           +LN  ++ L+  +W  H W +++ Q
Sbjct: 59  DLNLKDQILTTNVWLEHEWQDHKFQ 83


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 562 VSGIRPRDASSKYKSINCDYCCSVPSY 482
           V GI  RD++   K+I+  +  +VP Y
Sbjct: 125 VIGISSRDSAFSDKNIHVSFLRTVPPY 151


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +1

Query: 490 ELNNNNRSLSIYIWKTHLWAEYR 558
           E+N  N+ ++  +W    W +Y+
Sbjct: 72  EMNLKNQVMTTNVWVEQRWNDYK 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,782
Number of Sequences: 438
Number of extensions: 4575
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)