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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00333
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49790.1 68414.m05583 F-box family protein-related contains w...    29   3.7  
At2g03610.1 68415.m00321 F-box family protein contains F-box dom...    29   4.9  
At1g59870.1 68414.m06745 ABC transporter family protein similar ...    28   6.4  

>At1g49790.1 68414.m05583 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain
          Length = 283

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 114 FQCADRKYVFVVGIWMVGFKKKIVNTALHVV 22
           F+C D K+    G W +GF +  VN +  +V
Sbjct: 88  FECVDSKFDVFPGFWTMGFGRDNVNGSYKIV 118


>At2g03610.1 68415.m00321 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 216

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 671 CSDFWCFWYTIKNYIFQWQLKYFGIFKMRF 582
           CSD++  W T K Y  +W      IF M +
Sbjct: 49  CSDWYSVWKTCKGYDSKWNQNSGSIFDMAY 78


>At1g59870.1 68414.m06745 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1469

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 507  SQFIDLYLEDASLGRIPDTTEKPVIESHFKYAKVFQLPLKNII 635
            SQ+ D+      LG  PD T K  IE H+ +   F  P+  ++
Sbjct: 1404 SQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVL 1446


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,099,725
Number of Sequences: 28952
Number of extensions: 315508
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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