BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00333 (815 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g49790.1 68414.m05583 F-box family protein-related contains w... 29 3.7 At2g03610.1 68415.m00321 F-box family protein contains F-box dom... 29 4.9 At1g59870.1 68414.m06745 ABC transporter family protein similar ... 28 6.4 >At1g49790.1 68414.m05583 F-box family protein-related contains weak hit to TIGRFAM TIGR01640 : F-box protein interaction domain Length = 283 Score = 29.1 bits (62), Expect = 3.7 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -3 Query: 114 FQCADRKYVFVVGIWMVGFKKKIVNTALHVV 22 F+C D K+ G W +GF + VN + +V Sbjct: 88 FECVDSKFDVFPGFWTMGFGRDNVNGSYKIV 118 >At2g03610.1 68415.m00321 F-box family protein contains F-box domain Pfam:PF00646 Length = 216 Score = 28.7 bits (61), Expect = 4.9 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -1 Query: 671 CSDFWCFWYTIKNYIFQWQLKYFGIFKMRF 582 CSD++ W T K Y +W IF M + Sbjct: 49 CSDWYSVWKTCKGYDSKWNQNSGSIFDMAY 78 >At1g59870.1 68414.m06745 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza] Length = 1469 Score = 28.3 bits (60), Expect = 6.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +3 Query: 507 SQFIDLYLEDASLGRIPDTTEKPVIESHFKYAKVFQLPLKNII 635 SQ+ D+ LG PD T K IE H+ + F P+ ++ Sbjct: 1404 SQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVL 1446 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,099,725 Number of Sequences: 28952 Number of extensions: 315508 Number of successful extensions: 772 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 749 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 772 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1863090400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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