Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00332
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837...    28   5.9  
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105...    28   5.9  

>08_02_1359 +
           26382605-26382815,26382907-26382998,26383722-26383791,
           26383895-26384013,26384580-26384676,26384781-26384860,
           26384986-26385180,26385460-26385520,26386408-26386468,
           26386900-26386993,26387085-26387157,26387158-26387270,
           26387444-26387587
          Length = 469

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 249 TMRIERISSSFRIDYCLLVGLKVSLSSQRIFKNNCAVI 136
           T  +E I  SF  D CLLVG++ +  + ++  +N + +
Sbjct: 384 TGSVEFIQCSFHSDVCLLVGMRTTEVTAKVSYHNYSTV 421


>02_05_0061 +
           25506648-25509399,25509564-25509901,25510392-25510593,
           25510779-25510854,25512036-25512294
          Length = 1208

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 343 D*MKLNIENFFSLTPITIYNMLSVQCFRANLNN 245
           D + L   NF    PIT+ NM+S+   R + NN
Sbjct: 474 DSLDLGRNNFSGSIPITVGNMVSLSSLRFSFNN 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,759
Number of Sequences: 37544
Number of extensions: 182796
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)