Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00332
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g...    28   4.9  
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR...    27   8.6  
At1g67130.1 68414.m07637 F-box family protein contains Pfam PF00...    27   8.6  

>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
            synthase 1 nearly identical to callose synthase 1
            catalytic subunit [Arabidopsis thaliana] GI:13649388
          Length = 1922

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 207  YCLLVGLKVSLSSQRIFKNN 148
            Y +L GL+  LSSQR F+NN
Sbjct: 1509 YLVLSGLEEGLSSQRAFRNN 1528


>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1145

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 325 IENFFSLTPITIYNMLSVQCFRANL 251
           IENFF+LT +T+ +   ++C   N+
Sbjct: 856 IENFFNLTKLTMRSCSKLKCLSLNI 880


>At1g67130.1 68414.m07637 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 391

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 149 LFLKILWLDKDTFKPTKRQ*SILKLEEIRSILIVQIGAK 265
           ++L+ +W+ K+ F P  +Q  +L L  + +  I+ +G +
Sbjct: 115 IYLRTVWMSKEGFDPIGKQFKVLVLNILDNHYILTLGTE 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,241
Number of Sequences: 28952
Number of extensions: 179738
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)