Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00331
(676 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like prote... 26 0.25
AJ457831-1|CAD29886.1| 249|Tribolium castaneum helix-loop-helix... 25 0.75
AY531877-1|AAT08872.1| 247|Tribolium castaneum ORF1p protein. 23 3.0
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 4.0
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 21 7.0
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 21 9.2
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 21 9.2
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 21 9.2
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 21 9.2
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 21 9.2
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 21 9.2
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 21 9.2
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 21 9.2
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 21 9.2
>AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like protein
protein.
Length = 314
Score = 26.2 bits (55), Expect = 0.25
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Frame = +3
Query: 63 RPPGGGHTNIFDSEPE--PPRTGRRAVPPSAT------STFSHGQGDEPKATNGTSVATN 218
R PGG H+ EPE ++ VP S + + FS GQ + P ++ +
Sbjct: 16 RSPGGDHSENMQDEPENLSNKSNSITVPLSISTGQRLPANFSFGQVNSPPSSTSSGSLGQ 75
Query: 219 GQSTPKESPEPQSSRRHLLQQSALPKP 299
+TP P ++ + + LP+P
Sbjct: 76 FPATPVIDP----AKDPAIYSNLLPRP 98
>AJ457831-1|CAD29886.1| 249|Tribolium castaneum helix-loop-helix
transcription factor protein.
Length = 249
Score = 24.6 bits (51), Expect = 0.75
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 183 PKATNGTSVATNGQSTPKESPEPQSSRRHLLQQSALPKPT 302
P+ T T+ + + S P +SPEP+S R L +PT
Sbjct: 203 PQRTASTASSASNYS-PSQSPEPESVRPLSLVVRRCEEPT 241
>AY531877-1|AAT08872.1| 247|Tribolium castaneum ORF1p protein.
Length = 247
Score = 22.6 bits (46), Expect = 3.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 140 TKRNEHFQPRTRR*AESDQRH 202
T+RN +++PRT R ++H
Sbjct: 227 TRRNPYYRPRTSRTEPPRRKH 247
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 22.2 bits (45), Expect = 4.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 195 NGTSVATNGQSTPKESPEPQSSRRH 269
+G + G K P+ QSSRRH
Sbjct: 239 DGKNQQRTGTELTKMRPKRQSSRRH 263
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.4 bits (43), Expect = 7.0
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 9 APFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 188
+P ++ N S+ L P + P ATST S
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPAS 171
Query: 189 ATNGTSVATNGQSTPKESPEPQSS 260
+T+ TS + S QSS
Sbjct: 172 STSSTSSTEKAGTNNNNSKSSQSS 195
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 21.0 bits (42), Expect = 9.2
Identities = 5/11 (45%), Positives = 6/11 (54%)
Frame = -3
Query: 143 WWNGTAPGPRW 111
WW+ T P W
Sbjct: 1042 WWSSTTTSPWW 1052
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 9.2
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 9 APFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 188
+P ++ N S+ L P + P ATST S
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171
Query: 189 ATNGTSVATNGQSTPKESPEPQSS 260
+T+ TS + S QSS
Sbjct: 172 STSSTSSTEKAGTNNNNSKSGQSS 195
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 21.0 bits (42), Expect = 9.2
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 9 APFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 188
+P ++ N S+ L P + P ATST S
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171
Query: 189 ATNGTSVATNGQSTPKESPEPQSS 260
+T+ TS + S QSS
Sbjct: 172 STSSTSSTEKAGTNNNNSKSGQSS 195
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 9.2
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 9 APFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 188
+P ++ N S+ L P + P ATST S
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171
Query: 189 ATNGTSVATNGQSTPKESPEPQSS 260
+T+ TS + S QSS
Sbjct: 172 STSSTSSTEKAGTNNNNSKSGQSS 195
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 21.0 bits (42), Expect = 9.2
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 9 APFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 188
+P ++ N S+ L P + P ATST S
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171
Query: 189 ATNGTSVATNGQSTPKESPEPQSS 260
+T+ TS + S QSS
Sbjct: 172 STSSTSSTEKAGTNNNNSKSGQSS 195
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 21.0 bits (42), Expect = 9.2
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 9 APFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 188
+P ++ N S+ L P + P ATST S
Sbjct: 68 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 127
Query: 189 ATNGTSVATNGQSTPKESPEPQSS 260
+T+ TS + S QSS
Sbjct: 128 STSSTSSTEKAGTNNNNSKSGQSS 151
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
protein.
Length = 1156
Score = 21.0 bits (42), Expect = 9.2
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 151 VALGGTARRPVLGGSGSESKMLVWPPPGG 65
V L GTA P G SG S PP G
Sbjct: 1104 VPLKGTAVPPPSGSSGPGSTGSKSPPVAG 1132
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 9.2
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 9 APFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 188
+P ++ N S+ L P + P ATST S
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171
Query: 189 ATNGTSVATNGQSTPKESPEPQSS 260
+T+ TS + S QSS
Sbjct: 172 STSSTSSTEKAGTNNNNSKSGQSS 195
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 9.2
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 9 APFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 188
+P ++ N S+ L P + P ATST S
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171
Query: 189 ATNGTSVATNGQSTPKESPEPQSS 260
+T+ TS + S QSS
Sbjct: 172 STSSTSSTEKAGTNNNNSKSGQSS 195
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,109
Number of Sequences: 336
Number of extensions: 3008
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -