Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00331
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.12 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    29   0.46 
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    27   2.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.5  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   3.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.3  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   7.6  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   10.0 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   10.0 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   10.0 
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   10.0 

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +3

Query: 66  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 233
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +3

Query: 66  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 233
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 138 PPSATSTFSHGQGDEPKATNGTSVA-TNGQSTPKESPEP--QSSRRHLLQQS 284
           PP++TS  S+G G  P+   G+S    NG  T + S  P  QS  + L + S
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQTQQISSLPPFQSQTQFLARNS 471


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 401 PHPLAVSLYNQIFDFHLTHIMSQICIEAKFFLRY 502
           P+  ++S+YNQI D +   I  +      +FLRY
Sbjct: 45  PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/64 (25%), Positives = 23/64 (35%)
 Frame = +3

Query: 108 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQQSA 287
           E P  G    PP +    +   G  P  +N  + AT   S    +P P  +        A
Sbjct: 39  ECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGA 98

Query: 288 LPKP 299
            P+P
Sbjct: 99  APQP 102


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 337 RSPQARQGPPRRVLLGLVVNRTAPVG--CESVQSNL 438
           ++PQ +  PP   L  + VN+  PVG  C+  + NL
Sbjct: 60  KTPQEQTNPPTVGLSKIFVNKKYPVGEVCDYAEDNL 95


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 66  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 245
           PP    +N   S P PP+ GR A PP    + +   G +P   + +   +N  + P   P
Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPPPAIP 396


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 654 LSWLNYERIQPILASLADNTTLIISKGKIGNTHCF-EHL*SQLQNFKRATEAYLKKN 487
           LS+L  E ++P   S + +      K  + +  C   +L S  +NF++++++YLK N
Sbjct: 255 LSFLG-ENLKPKFTSRSSSVYASPIKSSLNSLECNPSNLLSVRKNFQQSSDSYLKSN 310


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 42  RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 221
           R    VL P    HT+  +  PE  R G  + P S++ +  +     P + + ++ + NG
Sbjct: 448 RGGKNVLSPEAKEHTHK-NISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNG 506

Query: 222 QS 227
           ++
Sbjct: 507 ET 508


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 61  SAPPVVATLTSSIPNRSHRGPGAVPFHQ-AQRALSATDK 174
           + P  +A  TS+IPN    GP   P  Q AQ A  ++ K
Sbjct: 16  AVPKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSK 54


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
 Frame = +3

Query: 18  NVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST--------FSHGQ 173
           N   N G   S+     P    T     +P    T   A P S+TST        FS G+
Sbjct: 147 NNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGK 206

Query: 174 GDEPKATNGTSVATNGQS 227
                +TN  S +T   S
Sbjct: 207 PASLGSTNNASTSTTANS 224


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 49  QAGCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEM--SRKRPTALQ*RPTV 222
           +   + PP +    S  P +  R P + P H    + +A+   +  + +R T+    PT+
Sbjct: 115 EVSSNTPPNMTRAASQPPPQVQRLPASAPKHDLYSSANASSASLHPTEQRTTS---SPTI 171

Query: 223 SPLLRRARSHSP 258
                R  + SP
Sbjct: 172 PSYANRTHTDSP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,344
Number of Sequences: 5004
Number of extensions: 49018
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)