BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00331 (676 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 38 0.010 SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 32 0.37 SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85 SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 30 1.5 SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7) 30 1.5 SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_7151| Best HMM Match : TCP (HMM E-Value=0.92) 29 2.6 SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05) 29 2.6 SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4 SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) 29 3.4 SB_7954| Best HMM Match : Myosin_tail_2 (HMM E-Value=1e-22) 29 3.4 SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5 SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5 SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 28 6.0 SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0 SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07) 28 6.0 SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 28 6.0 SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 28 6.0 SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 28 6.0 SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9 SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2) 28 7.9 SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 28 7.9 SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 7.9 SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9 SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1) 28 7.9 SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6) 28 7.9 >SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) Length = 754 Score = 37.5 bits (83), Expect = 0.010 Identities = 24/79 (30%), Positives = 30/79 (37%) Frame = +3 Query: 57 VLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPK 236 V P F E EPP+ R+ PPS T S P+ T S + S K Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRTGR-SKTIHKRPRMTQPDSRNVSSTSRDK 376 Query: 237 ESPEPQSSRRHLLQQSALP 293 SP+ S+R LP Sbjct: 377 SSPDESSARGFTRPDGYLP 395 >SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) Length = 695 Score = 32.3 bits (70), Expect = 0.37 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Frame = +3 Query: 87 NIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRR 266 NI +P PPR + A PP+ + EP G S P P PQ + R Sbjct: 197 NIPSPKPRPPRASKIAAPPAPSLQAVCIDLPEPPLKAGDSPLKRSVKAPLPPPPPQQASR 256 Query: 267 HLLQQS---ALPKPTVQS 311 + S A P P++Q+ Sbjct: 257 IDYRASYGAAPPAPSLQA 274 Score = 28.3 bits (60), Expect = 6.0 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Frame = +3 Query: 87 NIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRR 266 NI +P PPR + A P + + EP G S P P PQ + R Sbjct: 338 NIPSPKPRPPRASKIAAPLAPSLQAVCIDLPEPPLKAGDSPLKRSVKAPLPPPPPQQASR 397 Query: 267 HLLQQS---ALPKPTVQS 311 + S A P P++Q+ Sbjct: 398 IDYRASYGAAPPAPSLQA 415 >SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 456 Score = 31.1 bits (67), Expect = 0.85 Identities = 18/66 (27%), Positives = 27/66 (40%) Frame = +3 Query: 102 EPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQQ 281 +P+ P G + T + G EP+ +GT P+E EP ++R L Sbjct: 274 KPDDPHQGGDSTGNQGTQR-TFGNPREPRGPSGTQRTLGDPENPREPREPSETQRTLGDP 332 Query: 282 SALPKP 299 L KP Sbjct: 333 ENLRKP 338 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Frame = +3 Query: 66 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQG-DEPKATNGTSVATNGQSTPKES 242 P G T +PE PR R P T + +P+ +GT P+E Sbjct: 300 PRGPSGTQRTLGDPENPREPRE--PSETQRTLGDPENLRKPREPSGTQRTLGDPENPREP 357 Query: 243 PEPQSSRRHLLQQSALPKP 299 EP + R L L KP Sbjct: 358 REPSETERTLRDPENLRKP 376 >SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) Length = 863 Score = 30.3 bits (65), Expect = 1.5 Identities = 17/63 (26%), Positives = 29/63 (46%) Frame = +3 Query: 72 GGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEP 251 G GH N D + GR PPS++S+ S +++ +S +++ S+ S Sbjct: 550 GWGHLNFDDLRGDIRCLGRFVSPPSSSSSSSPPPASSSSSSSSSSSSSSSSSSSSSSSSS 609 Query: 252 QSS 260 SS Sbjct: 610 SSS 612 >SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7) Length = 543 Score = 30.3 bits (65), Expect = 1.5 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Frame = +3 Query: 78 GHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKAT-----NGTSVATNGQSTPKES 242 G T +++PE T + P+ + + + ++PKA + S + G ++ + Sbjct: 187 GMTTSMENDPEAVPTSAGSATPTGSESIATSMENDPKAVITFAGSAASTESEGMTSMEND 246 Query: 243 PEPQSSRRHLLQQSA 287 PE S++R L+ A Sbjct: 247 PEAISAQRRRLETRA 261 >SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1850 Score = 29.5 bits (63), Expect = 2.6 Identities = 19/66 (28%), Positives = 25/66 (37%) Frame = +3 Query: 3 ARAPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDE 182 A AP + G ++ PP GG + P G V P+AT G Sbjct: 908 ATAPTATTPSGGGNETAPTATPPSGGGNETAPTATPPSGVGNETV-PTATPPSGSGNETA 966 Query: 183 PKATNG 200 P AT+G Sbjct: 967 PTATSG 972 >SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1032 Score = 29.5 bits (63), Expect = 2.6 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +3 Query: 135 VPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQQSALPKPTV 305 + P T+T + G+ +P + A ST K+ P P SRR +Q LP+P V Sbjct: 98 ITPDGTAT-NQGRVRDPLSWRDYEYALRPISTLKQPPNPPQSRRR-RRQEYLPQPYV 152 >SB_7151| Best HMM Match : TCP (HMM E-Value=0.92) Length = 188 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 138 PPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRH 269 PPS++S G+ TNG S NG++TP SP H Sbjct: 103 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP--SPTGTEGTNH 144 >SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 421 Score = 29.5 bits (63), Expect = 2.6 Identities = 19/54 (35%), Positives = 20/54 (37%) Frame = +3 Query: 138 PPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQQSALPKP 299 P S T G+G K T SV P ESPEP L LP P Sbjct: 159 PTSPTYIVGSGEGVTAKITPAASVRLVNTRMPDESPEPTRPPPPLDDLDDLPPP 212 >SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05) Length = 822 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 138 PPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRH 269 PPS++S G+ TNG S NG++TP SP H Sbjct: 775 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP--SPTGTEGTNH 816 >SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 550 Score = 29.5 bits (63), Expect = 2.6 Identities = 18/66 (27%), Positives = 24/66 (36%) Frame = +3 Query: 66 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 245 P GGG + + P PP G R +PP + +G P G P+ P Sbjct: 446 PQGGGPPQLPPNLPPPPG-GMRGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRGMP 504 Query: 246 EPQSSR 263 P R Sbjct: 505 PPPRQR 510 >SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 209 Score = 29.1 bits (62), Expect = 3.4 Identities = 21/67 (31%), Positives = 31/67 (46%) Frame = +3 Query: 33 DGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVA 212 +G + S P G T ++ P P G VPP+ + S+G +NGT+V Sbjct: 108 NGPTVPSNGTTVPSNGTTVPYNG-PTVPSNGA-TVPPNGATVPSNGT---TVPSNGTTVP 162 Query: 213 TNGQSTP 233 TNG + P Sbjct: 163 TNGTTVP 169 >SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) Length = 419 Score = 29.1 bits (62), Expect = 3.4 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +3 Query: 69 PGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGD---EPKATNGTS--VATNGQSTP 233 P G +N S PPR + PP+ + S+ Q P+ ++ S + + GQS Sbjct: 325 PSRGQSNKQSSPTPPPRQSDKQSPPTPSRGQSNKQSSPTPPPRQSDKQSPPIPSRGQSNK 384 Query: 234 KESPEP 251 + SP P Sbjct: 385 QSSPTP 390 >SB_7954| Best HMM Match : Myosin_tail_2 (HMM E-Value=1e-22) Length = 374 Score = 29.1 bits (62), Expect = 3.4 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 2/72 (2%) Frame = +3 Query: 69 PGGGHTNIFDSEPEPP--RTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKES 242 P G NI PP R GR A + T + +P T S+ T TP S Sbjct: 263 PSGKTLNISVPAGLPPDTRPGRSAGSSPISHTEQRLERPQPPITTNHSIGTGAHPTPSAS 322 Query: 243 PEPQSSRRHLLQ 278 P+ LLQ Sbjct: 323 PQNSPRCLALLQ 334 >SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1379 Score = 28.7 bits (61), Expect = 4.5 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = +3 Query: 81 HTNIFDSEPEPPRTGRRAVPPSAT-STFSHGQGDEPKATNGTSVATNGQSTPKES--PEP 251 +++I + + R PPS+T T P+++ + ++ TP+ S P P Sbjct: 480 NSHISPNSNQEDRPAMNLTPPSSTIHTPQSSTIHTPQSSTIHTPQSSTNPTPQSSTSPTP 539 Query: 252 QSSRRHLLQQSALPKP 299 QSS H Q S P P Sbjct: 540 QSSTIHTPQSSTSPTP 555 >SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 618 Score = 28.7 bits (61), Expect = 4.5 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Frame = +3 Query: 69 PGGGHTNIFDSEPEPPRTGRR-AVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 245 P H D P P R +PP + +T G E AT G ++++ T ++ Sbjct: 134 PSDSHATRDDGMPPDPHATRDDGMPPDSHATRDDGMPSESHATRGDGMSSDSHVT-RDDG 192 Query: 246 EPQSSRRHLLQQSALP 293 P S H + +P Sbjct: 193 MPSDS--HATRDDGMP 206 >SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) Length = 1321 Score = 28.3 bits (60), Expect = 6.0 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Frame = +3 Query: 45 LSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPP--SATSTFSHGQGDEPKATNGTSVATN 218 +SS+ PPG S+P+PP G + PP S Q + P ++ N Sbjct: 892 MSSQPQPPPGNQVNPPMSSQPQPP-PGNQVNPPMSSQPQPLPGNQVNPPMSSQPQPPPGN 950 Query: 219 GQSTPKES-PEPQSSRRHLLQQSALPKP 299 + P S P+P + S+ P+P Sbjct: 951 QVNPPMSSQPQPPPGNQVNPPMSSQPQP 978 Score = 27.9 bits (59), Expect = 7.9 Identities = 18/70 (25%), Positives = 27/70 (38%) Frame = +3 Query: 45 LSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQ 224 +SS+ PPG S+P+PP + P S+ G P ++ Q Sbjct: 876 MSSQPQPPPGNQVNPPMSSQPQPPPGNQVNPPMSSQPQPPPGNQVNPPMSSQPQPLPGNQ 935 Query: 225 STPKESPEPQ 254 P S +PQ Sbjct: 936 VNPPMSSQPQ 945 >SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 539 Score = 28.3 bits (60), Expect = 6.0 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Frame = +3 Query: 96 DSEPEPPRTGRRAVPPSATSTFSHGQGDE----PKATNGTSVATNGQSTPKESPEPQSSR 263 +++ +P RT R V S + + +H G + PK T +S ++ +TP+E Sbjct: 336 EAKTKPVRTVRSKVTLSKSKSKTHQPGSKRAKVPKTTPQSSSSSTSPTTPREGVGQDREV 395 Query: 264 RHLLQQSALPKPTVQ 308 + + A+P TV+ Sbjct: 396 LKVRGKQAIPTRTVR 410 >SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07) Length = 2435 Score = 28.3 bits (60), Expect = 6.0 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 9/88 (10%) Frame = +3 Query: 48 SSRVLRPPGGGHTNIFDS---EPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTS--VA 212 SSR L PG H+ + E PR R + PP T S+G ++ + S V+ Sbjct: 1989 SSRELLAPGERHSTVPSKAACEYPGPRAKRNSAPPDLQPTTSNGNSLSKQSASQESAYVS 2048 Query: 213 TNGQST-PKESP---EPQSSRRHLLQQS 284 + ++T P+ S RRH +Q S Sbjct: 2049 EDSRNTLPQMSSGSIAGNGGRRHTMQSS 2076 >SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) Length = 240 Score = 28.3 bits (60), Expect = 6.0 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 114 PRTGR-RAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQS 257 P+T R +++ S ++ G PK ++ TS T+ +S+PK SP+ S Sbjct: 106 PKTMRMKSLKTSPKTSPEIGPRTSPKTSSKTSPKTSPKSSPKTSPKTSS 154 >SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) Length = 1410 Score = 28.3 bits (60), Expect = 6.0 Identities = 13/50 (26%), Positives = 21/50 (42%) Frame = +3 Query: 99 SEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPE 248 S P P + ++ P +T + D P T T+ +TPK P+ Sbjct: 307 SGPSEPESSNKSSEPDSTPATNAPPSDSPSTTTPTTPQPPTPTTPKTHPQ 356 >SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) Length = 796 Score = 28.3 bits (60), Expect = 6.0 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +3 Query: 138 PPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSS 260 PP +T + TN T +T+ STP+ EPQ++ Sbjct: 220 PPPGPTTSRQNVSGQAGPTNMTQSSTSHSSTPRHHGEPQTT 260 >SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1143 Score = 27.9 bits (59), Expect = 7.9 Identities = 16/70 (22%), Positives = 33/70 (47%) Frame = +3 Query: 96 DSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLL 275 ++E P ++ + PP+ +T QG+ PK ++ + ++ + S SS+R Sbjct: 147 NTENRPRKSSKSPSPPTNRTT----QGESPKTSSSGHGQHSSRTAVRRSASFSSSQRRTS 202 Query: 276 QQSALPKPTV 305 + + KP V Sbjct: 203 ESESRSKPAV 212 >SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2) Length = 327 Score = 27.9 bits (59), Expect = 7.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 575 AKSETHIVLSIFDHNCRILKGQ 510 A+SETHI DH R+L+G+ Sbjct: 18 ARSETHIRCLSLDHKSRVLRGE 39 >SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) Length = 1691 Score = 27.9 bits (59), Expect = 7.9 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = +3 Query: 84 TNIFDSEPEP-PRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSS 260 + + D+ P P P++ S +GD P G S ++ +TPK Sbjct: 583 SKVSDTRNTPSPSLSSDTPSPASPSLLEQIEGDLPSHLAGYSTSSASSTTPKAVNYVTFK 642 Query: 261 RRHLLQQSALPKP 299 H+ ++ ++P P Sbjct: 643 ENHVSKEVSVPSP 655 >SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) Length = 356 Score = 27.9 bits (59), Expect = 7.9 Identities = 23/73 (31%), Positives = 30/73 (41%) Frame = +3 Query: 39 ARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATN 218 ARL + LR P I P P T P++ STF+ ++T TS N Sbjct: 17 ARLWLKTLRSP----IKINVIRPNPLSTFTTTARPNSQSTFTTSDIPNSQSTFTTSERPN 72 Query: 219 GQSTPKESPEPQS 257 QST + P S Sbjct: 73 SQSTFTTTARPNS 85 >SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2317 Score = 27.9 bits (59), Expect = 7.9 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Frame = +3 Query: 102 EPEPPRTG-RRAVPPSATSTFSHGQGDEPKATNGTSVA---TNGQSTPKESPEPQSSRRH 269 E P T P +ATS + G P +TNGT+ A T+G++ S + +S Sbjct: 951 ETTPETTSPSETTPTTATSMSTDGTTAAPMSTNGTTTAPRNTDGRTAAPMSTDETTSASM 1010 Query: 270 LLQQSALPKPT 302 +A P T Sbjct: 1011 TKHATAAPITT 1021 >SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1) Length = 549 Score = 27.9 bits (59), Expect = 7.9 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = +3 Query: 69 PGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPE 248 PG +T ++P P GR PP TST S+ + T G GQ+ S Sbjct: 283 PGNNYTQ---NKPFLPGRGRGYNPPRTTSTNSNIAKKSSRGTKGLEKTGVGQTIDFVSEP 339 Query: 249 PQSS 260 QSS Sbjct: 340 VQSS 343 >SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6) Length = 722 Score = 27.9 bits (59), Expect = 7.9 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +3 Query: 213 TNGQSTPKESPEPQSSRRHLLQQSALPK 296 +NGQ +P+ S PQ + RH+ +++A PK Sbjct: 41 SNGQESPEASTFPQPTSRHITKRAA-PK 67 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,281,041 Number of Sequences: 59808 Number of extensions: 408071 Number of successful extensions: 1527 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1313 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1509 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1733301648 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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