Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00331
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.87 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 112  GSGSESKMLVWPPPGGRSTLLDRRAPSLRPTL 17
            G GS+   +V+   G     LD+R P LR  L
Sbjct: 1612 GHGSDKDDVVYQQTGVGGATLDKRRPDLRDEL 1643


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 55   GCSAPPVVATLTSSIPNR 108
            GC++PP  AT   S+ +R
Sbjct: 1750 GCASPPPAATSMKSVSSR 1767


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 55   GCSAPPVVATLTSSIPNR 108
            GC++PP  AT   S+ +R
Sbjct: 1746 GCASPPPAATSMKSVSSR 1763


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +3

Query: 72  GGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEP 251
           G     I D+     R  +R +PP   + F  G      AT  ++ ++   + PK   + 
Sbjct: 58  GKSDKEILDNLLLSTRYDKRLLPPVQDADFCCGMRWPGDATGLSNRSSTSSNDPKNQYKN 117

Query: 252 QSSRRHLLQQ 281
           Q++  +   Q
Sbjct: 118 QNNNHYTSHQ 127


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 37  ELVYQAGCSAPPVVATLTSSIPNRS 111
           E V  AGC+A P    L S  P R+
Sbjct: 400 ETVDPAGCNAGPAKYYLKSRDPERT 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,999
Number of Sequences: 438
Number of extensions: 3702
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)