Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00331
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ... 32 0.30
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 31 0.53
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 31 0.93
At5g53140.1 68418.m06606 protein phosphatase 2C, putative / PP2C... 30 1.2
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 30 1.2
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 30 1.2
At2g42850.1 68415.m05306 cytochrome P450 family protein similar ... 30 1.2
At1g03260.1 68414.m00304 expressed protein 30 1.2
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 30 1.6
At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containi... 30 1.6
At5g19070.1 68418.m02267 expressed protein 29 2.1
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 3.8
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 3.8
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 28 5.0
At5g51300.2 68418.m06360 splicing factor-related contains simila... 28 6.6
At5g51300.1 68418.m06359 splicing factor-related contains simila... 28 6.6
At2g25560.1 68415.m03059 DNAJ heat shock N-terminal domain-conta... 28 6.6
At1g59840.2 68414.m06740 expressed protein 28 6.6
At1g59840.1 68414.m06739 expressed protein 28 6.6
At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ... 27 8.7
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 27 8.7
>At1g06070.1 68414.m00636 bZIP transcription factor, putative
(bZIP69) similar to transcriptional activator RF2a
GB:AF005492 GI:2253277 from [Oryza sativa]; contains
Pfam profile PF00170: bZIP transcription factor
Length = 423
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +3
Query: 144 SATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQQSALPKPTVQSE 314
SATST G+ EP N + +N QSTP S E + RH QS T++ E
Sbjct: 125 SATSTSQMGEPSEPTWRNELASTSNLQSTPGSSSE-RPRIRHQHSQSMDGSTTIKPE 180
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +3
Query: 108 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQQSA 287
+P R R PP S + ++ S+AT G P P P S R L S
Sbjct: 563 KPLRILSRPPPPPPPPPISSLRSTPSPSSTSNSIATQG-PPPPPPPPPLQSHRSALSSSP 621
Query: 288 LPKP 299
LP P
Sbjct: 622 LPPP 625
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 99 SEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQ 278
S+P+P + + P T SH + PK S T + P+P+S ++ +
Sbjct: 433 SKPKPEESPKPQQPSPKPETPSH-EPSNPKEPKPESPKQESPKTEQPKPKPESPKQESPK 491
Query: 279 QSALPKP 299
Q A PKP
Sbjct: 492 QEA-PKP 497
>At5g53140.1 68418.m06606 protein phosphatase 2C, putative / PP2C,
putative
Length = 420
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 159 FSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQQSALPKPTVQSE 314
F H + + PK + + P EP+S+ L+ ++PK ++SE
Sbjct: 347 FRHDKTESPKIETNAMAESEPELNPTTELEPESNPSTALETESIPKAELESE 398
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = +3
Query: 27 LNDGARLSSRVLRPPGGGHTNIFDSEPEP-PRTGRRAVPPSATSTFSHGQGDEPKATNGT 203
L + R + V RPP N + + P P P + R A P + + + P+A
Sbjct: 66 LGEAERDHNLVFRPPTPDRPNPYSASPPPRPASPRVASPRPTSPRVASPRVPSPRAEVPR 125
Query: 204 SVATNGQSTPKE-----SPEPQSSRRHLLQQSALPKPTVQSE 314
+++ S E SP+P S R L +S PKP +S+
Sbjct: 126 TLSPKPPSPRAEVPRSLSPKPPSPRAD-LPRSLSPKPFDRSK 166
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = +3
Query: 27 LNDGARLSSRVLRPPGGGHTNIFDSEPEP-PRTGRRAVPPSATSTFSHGQGDEPKATNGT 203
L + R + V RPP N + + P P P + R A P + + + P+A
Sbjct: 65 LGEAERDHNLVFRPPTPDRPNPYSASPPPRPASPRVASPRPTSPRVASPRVPSPRAEVPR 124
Query: 204 SVATNGQSTPKE-----SPEPQSSRRHLLQQSALPKPTVQSE 314
+++ S E SP+P S R L +S PKP +S+
Sbjct: 125 TLSPKPPSPRAEVPRSLSPKPPSPRAD-LPRSLSPKPFDRSK 165
>At2g42850.1 68415.m05306 cytochrome P450 family protein similar to
taxane 13-alpha-hydroxylase (GI:17148242) {Taxus
cuspidata}
Length = 485
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 349 ARQGPPRRVLLGLVVNRTAPVGCESVQSNLRFSFNSHYVTNMYRG 483
A+QG RVL G+V N + +G ES+ L + H+ T +RG
Sbjct: 134 AKQGEKHRVLRGIVANSLSYIGLESLIPKLCDTVKFHHETE-WRG 177
>At1g03260.1 68414.m00304 expressed protein
Length = 274
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 560 VFPILPFEMINVVLSASDARIG 625
V PILPF M+N +LS + R+G
Sbjct: 142 VVPILPFNMLNYLLSVTPVRLG 163
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Frame = +3
Query: 99 SEPEPPRTG-RRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP---EPQSSRR 266
S+ +PPR+ A PP ++S SH P S AT S SP P S
Sbjct: 167 SKSQPPRSSVSPAQPPKSSSPISHTPALSPSHATSHSPATPSPSPKSPSPVSHSPSHSPA 226
Query: 267 HLLQQSALPKPT 302
H S P+
Sbjct: 227 HTPSHSPAHTPS 238
>At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 727
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 105 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSS 260
P+PP +++ P+ H + + + T + +N QS P+ SP+PQS+
Sbjct: 4 PKPPNLSDKSLKPNFFH--GHRKPSQNRPTVYGGLFSNRQSIPRVSPQPQSN 53
>At5g19070.1 68418.m02267 expressed protein
Length = 280
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 470 ICIEAKFFLRYASVALLKFCNCDQRCSKQCVFPILPFEMINVVLSASDARIG 625
+ + K + ++ SVAL + + C + P+LPF M+N +LS + R+G
Sbjct: 110 VVAKLKDYPQFQSVALAIEKSGFKICLLLRLAPLLPFSMLNYLLSVTPIRLG 161
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Frame = +3
Query: 84 TNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSV---ATNGQSTPKESPEPQ 254
T F+S+P+PP +++ + + Q P S+ T QS P P+
Sbjct: 194 TEEFESQPKPPLLPSKSIDETRLRSPLMSQASSPPPLPSKSIDENETRSQSPPISPPKSD 253
Query: 255 SSRRHLLQQSALPKP 299
R S P P
Sbjct: 254 KQARSQTHSSPSPPP 268
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 105 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSS 260
P+P G A P+ T G+ P+ TN + ++ TP SP P+ S
Sbjct: 29 PQPSFPGDNATSPTREPT----NGNPPETTNTPAQSSPPPETPLSSPPPEPS 76
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 1 RHEHHSTLASMTELVYQAGCS-APPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATD 171
+ HH +S + LVY + S APP+ L+SS S P VP + + +A +
Sbjct: 220 QQHHHQRFSSPSFLVYPSNSSFAPPLQGVLSSS--TESEAVPQQVPAAEGEATTTAPE 275
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 138 PPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQ 278
PPS+ + D N SVA NG STP S++ LL+
Sbjct: 18 PPSSNGDTAPLALDHMNPQNSESVALNGSSTPIPDTNGSSAKPELLR 64
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 138 PPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSSRRHLLQ 278
PPS+ + D N SVA NG STP S++ LL+
Sbjct: 18 PPSSNGDTAPLALDHMNPQNSESVALNGSSTPIPDTNGSSAKPELLR 64
>At2g25560.1 68415.m03059 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 656
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +3
Query: 66 PPGGG------HTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQS 227
PPG G H + FDS GR+ P + +G+ D + T T+ +
Sbjct: 233 PPGSGSIRKTFHEHQFDSLRHTT-DGRKKNVPGRDNNGVYGEYDSFEWGVFTGTKTSAHA 291
Query: 228 TPKESPEPQSSRRHLLQQSALPKPTV 305
TP S + + RR +++A P T+
Sbjct: 292 TPTGSRKDEVVRREYTKRTAGPSSTI 317
>At1g59840.2 68414.m06740 expressed protein
Length = 297
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 126 RRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSS 260
R +P SA FSH D P+ +S +T+ + E P+P+ +
Sbjct: 9 RIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKN 53
>At1g59840.1 68414.m06739 expressed protein
Length = 297
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 126 RRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQSS 260
R +P SA FSH D P+ +S +T+ + E P+P+ +
Sbjct: 9 RIQIPWSANRQFSHPPLDFPRFIRASSSSTSQKPKTYEGPKPRKN 53
>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
similarity to cytochrome c biogenesis protein CcdA
[Paracoccus pantotrophus] GI:11095328; contains Pfam
profile PF02683: Cytochrome C biogenesis protein
transmembrane region
Length = 354
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 190 AFGSSPC--PWLKVLVALGGTARRPVLGGS 107
A +SPC P L L+ T+R PV+GGS
Sbjct: 261 ALAASPCSTPVLATLLGYVATSRDPVIGGS 290
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 66 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGD--EPKATNGTSVATNGQSTPKE 239
PPGG H+ S P + ++ P + S S PK+T+ S ++ ++P
Sbjct: 180 PPGGAHSPKSSSAVSPATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSPPA 239
Query: 240 SPEPQSS 260
P+SS
Sbjct: 240 PMAPKSS 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,121,896
Number of Sequences: 28952
Number of extensions: 291382
Number of successful extensions: 1005
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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