Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00330
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 54 3e-08
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 54 3e-08
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 50 3e-07
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 48 1e-06
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 48 2e-06
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 46 4e-06
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 46 8e-06
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 45 1e-05
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 44 2e-05
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 44 3e-05
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 9e-05
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 39 7e-04
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 9e-04
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 36 0.008
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 35 0.014
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.014
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 34 0.025
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.043
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 33 0.057
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 32 0.076
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 32 0.10
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 31 0.23
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.31
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 3.8
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 5.0
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.6
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 6.6
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 26 6.6
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 8.7
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 53.6 bits (123), Expect = 3e-08
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 299 CPICLKNL-EAGEK-VKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMP 436
CPIC ++ E EK KMPC HIF C+ WL+ +CP CR E+P
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 53.6 bits (123), Expect = 3e-08
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL-DKTNSCPFCRHEMP 436
C ICL++ G+KV +PC H FH CI W+ D ++CP C E+P
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVP 367
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 50.4 bits (115), Expect = 3e-07
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMP-CNHIFHPRCILTWLDKT-NSCPFCR 424
C +CL N E ++ +++ CNH FH CI WL + NSCP CR
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 254 IQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 424
+QK +I+ + + C IC++ + + V ++PC H FH CI WL +C CR
Sbjct: 382 VQKPPKELIDEEGE-CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 275 VIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN-SCPFCRHE 430
++E+++ C IC + + ++ +PC H+FH +CI TW+ SCP C +
Sbjct: 197 LLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 46.4 bits (105), Expect = 4e-06
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 302 PICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHE 430
P + + G ++ K+PC H FH C+ +W N+CP CR E
Sbjct: 39 PASISSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTE 81
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 45.6 bits (103), Expect = 8e-06
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMP-CNHIFHPRCILTWLDK-TNSCPFCR-HEMPTDDE 448
C ICL+ G+ +K+ C H FH CI WL NSCP CR H + T E
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTTQAE 818
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 290 KKGCPICL-KNLEAGEKVKKMPCNHIFHPRCILTWLDKTNS-CPFCRHEMPTDDEN 451
++ C ICL + E +++PC+HIFHP CI +L K + CP C+ + EN
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTNMLEN 550
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 44.4 bits (100), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 341 KKMPCNHIFHPRCILTWLDKTNSCPFCRHEM 433
K++PC HI H C+ WL++ +CP CR +
Sbjct: 324 KRLPCGHILHFHCLRNWLERQQTCPICRRSV 354
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 43.6 bits (98), Expect = 3e-05
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 350 PCNHIFHPRCILTWLDKTNSCPFCRHEMP 436
PC+H++H +C+L W++ + CP CR +P
Sbjct: 646 PCHHLYHRQCLLQWMETRSICPVCRCHLP 674
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPT 439
CPIC EA ++ C H + C+L WL ++ SCP CR ++ T
Sbjct: 85 CPICT---EALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYT 128
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 39.1 bits (87), Expect = 7e-04
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 230 TSACIERGIQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLD---K 400
T+A IE+ + VV +Q+ C+ L++ E + PC HIF CIL+ L
Sbjct: 180 TNAEIEKEEPSKKQVVPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAA 239
Query: 401 TNSCPFCRHEM 433
T CP CR ++
Sbjct: 240 TQKCPVCRRKV 250
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 38.7 bits (86), Expect = 9e-04
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 290 KKGCPICLKNLEAGEKVKKMPCNHI-FHPRCILTWLDKTNSCPFCRHEM 433
++ C ICL+ + G + + PC H F CI W+D++ +CP C+ +
Sbjct: 18 RRDCVICLQ--KDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKRHV 64
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 35.5 bits (78), Expect = 0.008
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 353 CNHIFHPRCILTWLDKTNSCPFCRHE 430
CNH FH CI WL+ N CP E
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNRE 99
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 34.7 bits (76), Expect = 0.014
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 281 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 424
E +K C +C++ + + C HIF CI W K + CP CR
Sbjct: 251 EGNRK-CSLCMEFIHCPAATE---CGHIFCWSCINGWTSKKSECPLCR 294
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 299 CPICLKNLEAG-EKVKKMPCNHIFHPRCILTWLDKTNSCPFCRH 427
C +CL+ +++ + + C H FH C+ W +SCP CR+
Sbjct: 208 CVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVCRY 249
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 33.9 bits (74), Expect = 0.025
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKM---PCNHIFHPRCILTWLDKTNS--CPFCR 424
C IC L + C H FH C+ W +NS CP CR
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.1 bits (72), Expect = 0.043
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 263 LQDVVIENQKKG--CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMP 436
++D++ EN + C IC L + V PC H F C++ L ++ CP CR +P
Sbjct: 155 MEDLLQENVSRELECQICFGMLY--DPVVS-PCGHTFCGPCLMQALTQSPQCPTCRFGLP 211
Query: 437 T 439
+
Sbjct: 212 S 212
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 32.7 bits (71), Expect = 0.057
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 224 KLTSACIERGIQKLQDVVIENQKKGCPICLKNL-EAGEKVKKMPCNHIFHPRCILTWLDK 400
K C+ + + + CPIC + + + E+V + C+H H RC ++
Sbjct: 246 KTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRT 305
Query: 401 TNSCPFC 421
CP C
Sbjct: 306 NYRCPTC 312
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 32.3 bits (70), Expect = 0.076
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 353 CNHIFHPRCILTWLDKTNSCPFCRHEM 433
C H++ C+ WL ++SCP C+ ++
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 31.9 bits (69), Expect = 0.10
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Frame = +2
Query: 257 QKLQDVVI----ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN---SCP 415
+++Q++V+ E+ C ICL + + + PC+H +H +CI L++++ SC
Sbjct: 174 KRMQELVLCGSSESGPPECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCF 233
Query: 416 FCR 424
CR
Sbjct: 234 ICR 236
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +2
Query: 353 CNHIFHPRCILTWLDKTNS---CPFCRHEMPTDD 445
C HIFH CI WL + S CP R D
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMDRQTFVVAD 85
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = +2
Query: 272 VVIENQKKGCPICLKNLEAGEKVKKM-PCNHIFHPRCILTW----LDKTNS----CPFCR 424
V ++N+ C +C + + C H+FH CI W +++ N CP+C+
Sbjct: 188 VELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQ 247
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 344 KMPCNHIFHPRCILTWLDKTNSCPFC 421
K PC + +P C + K CPFC
Sbjct: 57 KAPCKAVLNPYCHIDTRAKFWICPFC 82
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCP 415
CP+ L+ + + CNH + IL+ L+ T CP
Sbjct: 179 CPLTLQPIV--HPILSTACNHFYEKDAILSLLNPTCVCP 215
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 482 LVSLLSCRLHNFRHQ*ASHVYKTGMSLS 399
L+SL S +LH H AS V + G+SLS
Sbjct: 427 LISLSSKQLHPRHHNTASIVVQVGVSLS 454
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 353 CNHIFHPRCILTWLDKTNSCPFCR 424
C+H F CI +L + CP CR
Sbjct: 44 CSHTFCSFCIRDYLREHPMCPACR 67
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 599 LWLSCLMFIYNNFLLKHVHNVKFLSFLILHTVD*SSTP 712
+++S ++ + N F LKH ++ K S T+D S P
Sbjct: 450 IFISTVLHVVNIFFLKHQNSKKQKSLASSSTIDLSEQP 487
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 302 PICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSC 412
P + GE + + + + HPR LDKT+ C
Sbjct: 557 PTTPPSFNVGESLSRRSASPLQHPRTSPDMLDKTSPC 593
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,720
Number of Sequences: 5004
Number of extensions: 65089
Number of successful extensions: 193
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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