Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00330
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 7e-20
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 48 1e-05
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 47 1e-05
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 47 2e-05
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 44 1e-04
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 42 7e-04
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 41 0.001
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 38 0.007
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 38 0.011
SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34) 36 0.046
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 36 0.046
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 35 0.061
SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 34 0.14
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.19
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.19
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 33 0.19
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 33 0.19
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 32 0.43
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.57
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.57
SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07) 32 0.57
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 31 0.76
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 31 0.76
SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034) 31 1.3
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14) 30 2.3
SB_20928| Best HMM Match : NHL (HMM E-Value=0) 30 2.3
SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013) 30 2.3
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_41318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 29 4.0
SB_34769| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19) 28 7.0
SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_36247| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.2e-08) 28 7.0
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 7.0
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 94.7 bits (225), Expect = 7e-20
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = +2
Query: 281 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPTDDE 448
E CPICL + E GE K+MPC+H+FHP CIL WL+KTNSCP CRHE+PTD+E
Sbjct: 56 ELSTSSCPICLGDYEKGESTKQMPCDHLFHPGCILPWLEKTNSCPVCRHELPTDNE 111
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL-DKTNSCPFCRHEMPT 439
C ICL + G+K++ +PC+H +H +C+ WL + +CP C+ + T
Sbjct: 301 CAICLDEYKEGDKLRILPCDHAYHCKCVDPWLTEGKRTCPVCKRPVET 348
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 275 VIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFC 421
V E K C ICL+ + G+ ++ +PC H FH C+ WL +CP C
Sbjct: 207 VTEKNPK-CVICLEGFKNGQDLRIVPCRHEFHKECVDPWLLSNFTCPLC 254
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 254 IQKLQDVVI-ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN-SCP 415
I LQ V + E C IC++ G+ +K +PC H FH CI TWL T+ CP
Sbjct: 241 IDGLQCVTVNEGIDDVCLICMEEYAVGDSMKYLPCRHNFHSACIRTWLTYTSCKCP 296
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 46.8 bits (106), Expect = 2e-05
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 287 QKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPTDDE 448
+ K CPICL+ + + C H + C+ WL+ +CP CR +D+
Sbjct: 258 ESKSCPICLEEFTPETPTRLLVCGHKYCEPCLSRWLENNTTCPICRKPTSRNDD 311
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL 394
C +C+ + EK++K+PCNH FH +CI WL
Sbjct: 361 CVVCMMDYTNREKLRKLPCNHDFHSKCIDRWL 392
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCP 415
C +CL + V+K+ C H+FH CI +WL + CP
Sbjct: 212 CGVCLSAYHPLQYVRKLQCRHVFHRDCIDSWLATQSICP 250
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL--DKT---NSCPFCR 424
C ICL + G + +PC H FH CI WL D T + CP CR
Sbjct: 560 CVICLDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAPHHCCPNCR 606
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 281 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWL 394
+N C +CL + E + V+ +PC H +H RCI WL
Sbjct: 287 QNDDARCVVCLVDFEEKQLVRTLPCLHEYHTRCIDKWL 324
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 302 PICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPTD 442
P C ++ +++ C HIF CI W D+ +CP CR + D
Sbjct: 484 PTC--QVKLAKQIMLRTCKHIFCEDCISLWFDREQTCPMCRARVAGD 528
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 308 CLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 424
C+ E + + C+H F C+ +WL K N+CP CR
Sbjct: 371 CIVCQELFIRATTLTCSHSFCEYCLQSWLRKRNTCPICR 409
>SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34)
Length = 168
Score = 35.5 bits (78), Expect = 0.046
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 239 CIERGIQKLQDVVIENQKKGCPICLKNLEAGEKVKKM-PCNHIFHPRCI 382
C+ G++ V ++ + CP+CL+++ M PC H+ H C+
Sbjct: 113 CLGVGLKDSHKCVDKSARNDCPVCLEDIHTSRISANMSPCGHMIHSTCM 161
>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
Length = 758
Score = 35.5 bits (78), Expect = 0.046
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 239 CIERGIQKLQDVVIENQKKGCPICLKNLEAGEKVKKM-PCNHIFHPRCI 382
C+ G++ V ++ + CP+CL+++ M PC H+ H C+
Sbjct: 113 CLGVGLKDSHKCVDKSARNDCPVCLEDIHTSRISANMSPCGHMIHSTCM 161
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.061
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 227 LTSACIERG----IQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWL 394
L S C+ G I++ D V ++ K C IC LE C H+F +C++ W+
Sbjct: 31 LFSPCVAVGMGFDIERFLDPVEDDFK--CGICFGVLE---DPLVTTCGHVFCSQCLVHWI 85
Query: 395 DKTNSCPFCRHEMPTDD 445
+ +CP ++ DD
Sbjct: 86 AENGTCPLTCEQLAIDD 102
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 263 LQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPTD 442
LQ++ + + CP+CL+ +A V+ +PC H+F CI ++ C CR + D
Sbjct: 59 LQNIFELDYQPDCPVCLQ--QASYPVR-LPCGHMFCFLCIKGVALRSRKCAICRQPISPD 115
>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 269 DVVIENQKKGCPICLKNLEAGEKVKKMPCN---HIFHPRCILTWLDKTNSCPFCRHEMPT 439
DV + C +CLK + A + ++PC+ IFH +C+ + + C FC T
Sbjct: 215 DVSLNPGPTNCAVCLKGIRARQP--RLPCHLCEQIFHLKCLGAEYELSRCCQFCAVRSTT 272
Query: 440 D 442
+
Sbjct: 273 E 273
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEM-PTD 442
C IC LE + PC H + C+L WL N+CP R + P+D
Sbjct: 18 CCICRDVLE---EPLMAPCEHSYCSACVLGWLTHYNTCPEDRQSLWPSD 63
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 350 PCNHIFHPRCILTWLDKT---NSCPFCR 424
PC+H F CI WLD+T + CP C+
Sbjct: 174 PCDHYFCVLCICEWLDQTYNKSGCPVCK 201
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 350 PCNHIFHPRCILTWLDKT---NSCPFCR 424
PC+H F CI WLD+T + CP C+
Sbjct: 48 PCDHYFCVLCICEWLDQTYNKSGCPVCK 75
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 350 PCNHIFHPRCILTWLDKT---NSCPFCR 424
PC+H F CI WLD+T + CP C+
Sbjct: 174 PCDHYFCVLCICEWLDQTYNKSGCPVCK 201
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL-DKTNSCPFCRHEMPT 439
C ICL++ G +V + C+H H C + + + +CP CRH + T
Sbjct: 1985 CCICLEDAFTGCQV--LACSHKVHRDCAVAMVRNGVRNCPICRHPLYT 2030
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +2
Query: 350 PCNHIFHPRCILTWLDKT---NSCPFCR 424
PC+H F CI WLD+T + CP C+
Sbjct: 174 PCDHYFCVLCICEWLDQTYNKSGCPVCK 201
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 269 DVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTW 391
D + N + CP+CL +L + C H+F CIL W
Sbjct: 93 DATMSNSAQ-CPVCLMSLSEQKLGTPNSCMHVFCLECILEW 132
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 32.3 bits (70), Expect = 0.43
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 245 ERGIQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN---SCP 415
ER I +L V+ + CPICL L+ + C H+F C+ ++ CP
Sbjct: 47 ERLINQLLQVLSSGVSEECPICLDPLDDPSITR---CAHVFCTGCLTDVIENEGLAPRCP 103
Query: 416 FCR 424
CR
Sbjct: 104 MCR 106
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 424
CPICL+ + E ++ C H F CI + CP CR
Sbjct: 678 CPICLETITYPETLQG--CGHTFCRPCITEASKSSKLCPTCR 717
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 424
CPICL+ + E ++ C H F CI + CP CR
Sbjct: 753 CPICLETITYPETLQG--CGHTFCRPCITEASKSSKLCPTCR 792
>SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07)
Length = 322
Score = 31.9 bits (69), Expect = 0.57
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFH 370
C IC N+ K +K+PCNH+FH
Sbjct: 91 CAICWDNMG---KARKLPCNHLFH 111
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDK--TNSCPFCR-HEMPTD 442
C IC+ LE C H F C+ TWL + SCP CR H + D
Sbjct: 18 CNICVGVLE---NAITTICGHSFCESCLETWLSRPEVQSCPSCRSHVLSLD 65
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 31.5 bits (68), Expect = 0.76
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 350 PCNHIFHPRCILTWLDKTNSCPFCRHEM 433
PC H+F C+ LD CP CR +
Sbjct: 393 PCGHVFCRACLNRSLDHRPGCPICRSSL 420
>SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 31.1 bits (67), Expect = 1.00
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 248 RGIQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRH 427
R +QK + V ++ CPIC + V+ +PC H+ CI L C FC+
Sbjct: 416 RLLQKQESVDVDEL---CPICCAMRIS---VRFLPCRHVSCRSCITRHLMNNKECFFCKE 469
Query: 428 EMPT 439
+ T
Sbjct: 470 VVDT 473
>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
Length = 671
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 248 RGIQKLQDVVIENQKKGCPICLKNLEAGEKVKK---MPCNHIFHPRCILTWLDKTNSCPF 418
R + +D + CP L+ EKVK+ P H+F C+ WL CP
Sbjct: 81 RDVSLKKDAIKTMLNHQCPTKSAILDL-EKVKEPVVCPNQHVFCSPCLDLWLRTNRYCPT 139
Query: 419 CRHEMPTD 442
CR + D
Sbjct: 140 CRTPINQD 147
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 215 GVAKLTSACIERGIQKLQDVVIENQKKGCPICLKNLEAGEKVKKM 349
G++ ++ I+KL D ++N GCP+C + EA ++K +
Sbjct: 316 GISASIEKIYQKYIKKLTDPSVKND--GCPLCHRRFEANAQIKTL 358
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 353 CNHIFHPRCILTWLDKTNSCPFCRHEM 433
C H F CI++WL + CP C E+
Sbjct: 1382 CLHSFCRSCIVSWLQASYHCPVCDTEV 1408
>SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14)
Length = 390
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Frame = +2
Query: 305 ICLKNLEAGEKVKKMPCN-----HIFHPRCILTWLDKT--NSCPFCR 424
IC AGE+ PC+ H C+LTW K N+C CR
Sbjct: 201 ICRICHSAGEEPLVTPCHCSGSAKFVHATCLLTWFKKAVKNTCELCR 247
>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
Length = 795
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +2
Query: 305 ICLKNLEAGEKVKKMPCNHIFHPRCILTWLDK------TNSCPFCRHEMPTDD 445
+C K + A E K +PC H F +C+ L + +CP C + P D
Sbjct: 14 VCPKCMNAYENPKVLPCLHTFCSQCLSEELHRDCEGRLNVTCPKCLRDFPLRD 66
>SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)
Length = 499
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 353 CNHIFHPRCILTWLDKTNSCPFCRHEMPTDD 445
C+ IF CI WL +C CR + D
Sbjct: 347 CDQIFCSGCITAWLRNAGACSSCRSVLEVSD 377
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHE 430
C +C + L+ C H FH C + + N CP C E
Sbjct: 74 CNLCSRPLDL--PAVHFLCLHSFHQPCFEGYAENDNECPICTPE 115
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 281 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEM 433
ENQ C ICL+N V + C H+ R T + + CP CR ++
Sbjct: 532 ENQGTQCVICLEN---QRNVVLLNCGHVCSCR---TCAQQIHQCPVCRGDI 576
>SB_41318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 353 CNHIFHPRCILTWLD--KTN--SCPFCRHEMPT 439
C + H +C W+ +T +CP CRH P+
Sbjct: 52 CGQVCHQQCFWKWIHFHRTEDITCPHCRHAFPS 84
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 299 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLD---KTN-----SCPFCRHEMPTDD 445
C IC + LE + PC H F C+ TW++ + N SCP CR ++ D
Sbjct: 18 CGICAEVLE---RAVLTPCGHSFCGVCLETWMNAKLEENEKCPASCPSCRADLYQGD 71
>SB_34769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 1 RHEHVNSL*ILLNHYITLIL*IIFVPHSILEKWLVILKKWVGENWVMG 144
+H ++ ++LN + +L I +P + KW + +KW G WV G
Sbjct: 58 KHMRTSTNVLILNMALGDLLLTIDIPFIV--KWFFVHEKWFGGRWVGG 103
>SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)
Length = 337
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = +2
Query: 242 IERGIQKLQDVVIENQKK-GCPIC----LKNLEAGEKVKKMPC-NHIFHPRCILTWLD-- 397
+E +KL + + N + C IC + + + + ++PC + H +C W
Sbjct: 8 LEPTYKKLCEQAVNNYEDLACVICQDGRITSNTSVTLLDRLPCCGQVCHQQCFWKWAHYH 67
Query: 398 --KTNSCPFCRHEMPT 439
+ +CP CRH P+
Sbjct: 68 RTEAVTCPHCRHVFPS 83
>SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 296 GCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKT 403
G P+ + +E K C H FH C+ ++D T
Sbjct: 85 GSPMLFELIEDSHCFTKTECYHYFHCSCLARYIDHT 120
>SB_36247| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.2e-08)
Length = 290
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 135 GDGEQPNHLLHFARFLIDSGLDRTGAAEWPSLPPPASKEAYKNY 266
G+ E P ++ A + S + A P LP +S EA KNY
Sbjct: 194 GNHEHPGDIIRNATVEVMSADSKQTAIRLPDLPAGSSPEAKKNY 237
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +2
Query: 287 QKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNS----CPFCRHEMPTD 442
Q+ C IC L + +PC H + RCI + S CP C E+P D
Sbjct: 141 QQLACGICHALLR---DARVLPCLHTYCRRCIEDIILHRQSVRAHCPSCNREIPLD 193
>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Frame = +2
Query: 353 CNHIFHPRCILTWL----DKTNSCPFCRHEMP 436
C H C W+ K ++CP CRH P
Sbjct: 56 CKQACHYPCFWKWIHYHRSKEDTCPHCRHVFP 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,764,324
Number of Sequences: 59808
Number of extensions: 454963
Number of successful extensions: 1118
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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