Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00330
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.57 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.57 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.3  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   7.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   7.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   7.1  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 214 RSGQAYLRLHRKRHTKITRCCNRK----SKERLPNMFEELRSWRK 336
           R  + Y +LH ++   +    NRK    S+ER  N ++  R +RK
Sbjct: 13  RKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRK 57


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 214 RSGQAYLRLHRKRHTKITRCCNRK----SKERLPNMFEELRSWRK 336
           R  + Y +LH ++   +    NRK    S+ER  N ++  R +RK
Sbjct: 13  RKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRK 57


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 85  ILEKWLVILKKWVGEN 132
           ++E W+ +L  W+ EN
Sbjct: 498 LIEHWMPLLPNWILEN 513


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 114 LQNNQPFLKYGMWNENYL*NESN 46
           L NN  +  Y  +N NY  N +N
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNN 107


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 114 LQNNQPFLKYGMWNENYL*NESN 46
           L NN  +  Y  +N NY  N +N
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNN 107


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 346 DAL*SYFPSKVYFDMV 393
           D + SYF  K+YF+++
Sbjct: 104 DTISSYFVGKMYFNLI 119


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 346 DAL*SYFPSKVYFDMV 393
           D + SYF  K+YF+++
Sbjct: 109 DTISSYFVGKMYFNLI 124


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 346 DAL*SYFPSKVYFDMV 393
           D + SYF  K+YF+++
Sbjct: 109 DTISSYFVGKMYFNLI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,204
Number of Sequences: 438
Number of extensions: 4630
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)