Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00329
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    26   0.28 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.1  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    23   1.9  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   4.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   5.9  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 83  HDERRQQRQHDPGCHDQLLRHATPVPAR 166
           H  + ++ QH+ G HDQ   +  P P R
Sbjct: 91  HRYKTKRAQHEKGMHDQQNNNPLPSPRR 118


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 460 QERPGRL*HEQPEEPKHQPSEVQVWDISQSQIEANNG 570
           +ERP    H++  EPK     +   ++++    AN G
Sbjct: 315 RERPRATDHQRRNEPKRPRPNIDRHEVTRPAAPANRG 351



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 329 NQW-DYPGNQFNKHNPQKSTPNSVNMSTGSQKQVKCNR 439
           N+W +  GN  N H  +K+ PN    +T S+ Q + +R
Sbjct: 374 NRWHNNNGNNSNNHW-RKNNPNDNRNNTSSRAQGETSR 410


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -3

Query: 492 LFMLQSAWSFLIWLQFVSRLHL 427
           +F+  + W F++W+  +S + L
Sbjct: 150 VFIFDNVWLFILWVGILSTIFL 171


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 552 LRLRYVPDLDFAGLMFW 502
           L++++  D + AGLM W
Sbjct: 336 LKVQFAKDHNMAGLMIW 352


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 549 RLRYVPDLDFAGLMFWLL 496
           +++++ D  FAG M W +
Sbjct: 412 KMKWIKDNGFAGAMVWTI 429


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,040
Number of Sequences: 336
Number of extensions: 2545
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)