Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00329
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.29
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.6
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 4.8
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 4.8
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.8
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 25 6.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 8.3
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 8.3
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 8.3
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 8.3
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 29.9 bits (64), Expect = 0.29
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -3
Query: 573 SSVVRFDLRLRYVPDLDFAGLMFWLLRLFMLQSAWSFLIWLQFVSRLHLTCFWLPVDMFT 394
+++V +L L Y + +M W + + + F W + +S HL W +D F
Sbjct: 26 AAIVGMNLSLLYCLLKGWKNVMIWGIETMLFGAIGIFFAWKKKLSWEHLVLLWSTIDAFF 85
Query: 393 EFGVDFC 373
+ C
Sbjct: 86 SMCLRSC 92
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 416 QKQVKCNRLTNCNQIKNDQADCS--MNSLRSQNISP 517
+K++KC+ L C K + +C+ M S R + SP
Sbjct: 36 RKKIKCDGLRPCKNCKAGKLECTYHMPSSRKSSFSP 71
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 356 FNKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQ 457
F+KH P +N G KQ RL + N+
Sbjct: 146 FDKHEPAPLVRIELNCGQGGDKQAATERLNHANK 179
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 86 DERRQQRQHDPGCHDQLLRHATPVPARTDQS 178
+ ++ +RQ P +++LLR A+ PA + S
Sbjct: 106 ESKKNERQGKPRSYNELLRQASSAPAVNETS 136
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 4.8
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 89 ERRQQRQHDPGCHDQLLRHATPVPART-DQSLQPERAVPSAASIQCRRQQQRDGTSTMK 262
ER+ Q +H QLL+H TP P T D L+ E+ V SA + Q +G + M+
Sbjct: 205 ERKVQPEHVTKELHQLLQHNTPSPFDTIDLQLKNEQ-VQSAGLLVSLLPHQVEGHAWME 262
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 193 CSTLSRLHTMPSSTTT*WDLHNEEQSPIQPSYDE 294
C T+ LHT+ +S + + L EE+ + DE
Sbjct: 192 CLTVEELHTLMNSFSFIYKLPEEEKEKVHAELDE 225
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 554 SKRTTEDGRPKTI 592
+++TTEDG PKTI
Sbjct: 2060 NEKTTEDGHPKTI 2072
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 151 TSARPHRPIITTRTCSTLSRL-HTMPSSTTT 240
TSA P RP+ T T S++++ T P ST T
Sbjct: 482 TSASPDRPLSQTITESSVAKTKSTTPKSTDT 512
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +1
Query: 340 LSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPEEPKHQPS 519
L ++S+ QST + +E + K T E P+Q+ + P QP+
Sbjct: 659 LGKESLPSQQSTVSNHHRKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPT 718
Query: 520 EVQ 528
E Q
Sbjct: 719 EGQ 721
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 169 RPIITTRTCSTLSRLHTMPSSTTT 240
+P+ T T S L+R+HT PS T
Sbjct: 558 KPVQTVVTSSGLARVHTDPSEIDT 581
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 94 STTAAT*PGVS*PVTATRNTSARPHRP 174
STT++ PG S A N +++PH P
Sbjct: 235 STTSSLRPGSSTTTEAGANNASKPHMP 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,283
Number of Sequences: 5004
Number of extensions: 40543
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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