Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00329
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0134 + 8790409-8790421,8790716-8791023,8791836-8792153,879... 33 0.17
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 30 1.6
09_06_0151 - 21237677-21237704,21237759-21237829,21238101-212382... 29 2.8
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 28 4.9
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786... 28 6.5
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 27 8.5
05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057 27 8.5
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 27 8.5
01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887 27 8.5
>05_03_0134 +
8790409-8790421,8790716-8791023,8791836-8792153,
8793021-8793212,8793383-8793618,8793696-8793953,
8794237-8794315,8797728-8797895
Length = 523
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 QPMGLSRQSVQQTQSTEV-HTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPEEP 504
Q L+ Q V TQ E +E ++ +G+ E + ++ PNQ +P +L QPEEP
Sbjct: 214 QQSELAIQEVSPTQQLETAQSEPKKQAEGEIE----EVPEQAMPNQPKPSQLEQSQPEEP 269
Query: 505 K 507
K
Sbjct: 270 K 270
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 452 NQIKNDQADCSMNSLRSQNISPAKSKSGTYLSRKSKRTTED 574
N+ D+ D S SQN AKSK+ L++KS RT D
Sbjct: 135 NEDDTDEHDTSGLLFESQNSYCAKSKNINELNKKSSRTARD 175
>09_06_0151 -
21237677-21237704,21237759-21237829,21238101-21238281,
21238369-21238441,21239033-21239072,21239818-21239890,
21240075-21240151,21241033-21241138,21241256-21241278,
21241369-21241440
Length = 247
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 320 RPYNQWDYPGNQFNKHNPQKSTPNSVNMSTGSQKQVKCN 436
RPY+ YP NQ ++ + S P++V Q Q C+
Sbjct: 171 RPYSYASYPTNQVSRISIPNSAPSAVYEDQTQQSQACCS 209
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 228 RRHCMEAAEGTARSGCNDW 172
RR C+E EG SGC W
Sbjct: 119 RRRCLEPGEGGGGSGCRRW 137
>07_03_1782 +
29477748-29478169,29478257-29478413,29478518-29478610,
29478753-29478938,29479107-29479187,29479788-29479925,
29480044-29480208
Length = 413
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 519 AGLMFWLLRLFMLQ----SAWSFLIWLQFVSRLH 430
AGL F + L ML W F++WL FV+ LH
Sbjct: 266 AGLTFLMGPLLMLNLYFVPYWIFVMWLDFVTYLH 299
>08_01_0704 +
6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 27.5 bits (58), Expect = 8.5
Identities = 27/97 (27%), Positives = 46/97 (47%)
Frame = +1
Query: 160 RPHRPIITTRTCSTLSRLHTMPSSTTT*WDLHNEEQSPIQPSYDE**PILQSPEALQPMG 339
RP + +T + S LSR T+ T ++ + QS S D+ +Q+ +
Sbjct: 649 RPRQEYVTNYSQSQLSRAATVNQIETNQRNMSGQLQSSQADSLDQ----IQTEQESSASR 704
Query: 340 LSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL 450
L QS Q E+HT +E++ + E SQV A+++
Sbjct: 705 L--QSSQADSFNEIHT-IQEYITEQSE-SQVSHANQI 737
>05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057
Length = 206
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 329 NQWDYPGNQFNKHNPQKSTPNSVNMSTG---SQKQVKCNRLT 445
NQ D G+ +H P +TP+S S+ +++++CNR T
Sbjct: 56 NQIDARGSTEKRHRPLGTTPSSCCYSSSPRHRRRELQCNRWT 97
>03_02_0726 + 10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +2
Query: 320 RPYNQWDYPGNQFNKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQI 460
R + W Y F +P K T + + +K + LT+CN++
Sbjct: 1168 RDSHHWSYQATHFIAPDPLKRTEKFFAAAAAGKWILKTDYLTSCNEV 1214
>01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887
Length = 302
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 89 ERRQQRQHDPGCHDQLLRHATPVPARTDQSLQPERAVPSAASIQCRRQQQ 238
++ +QR DP H + A A D S Q ++ +A ++QQQ
Sbjct: 118 KKLRQRGIDPSTHQPISTAAAAAAAALDTSTQDQKPPATADGFALKQQQQ 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,361,129
Number of Sequences: 37544
Number of extensions: 301780
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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