Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00329
(593 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 30 1.6
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 29 3.7
SB_52559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25) 27 8.6
SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6) 27 8.6
SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_41328| Best HMM Match : NLPC_P60 (HMM E-Value=5.8) 27 8.6
SB_36659| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 146 ATPVPARTDQSLQPERAVPSAASIQCRRQQ 235
A PVPARTDQ+ +PER VP+ AS Q RR++
Sbjct: 367 APPVPARTDQTPRPERPVPAGASPQSRRRR 396
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 31.5 bits (68), Expect = 0.53
Identities = 27/140 (19%), Positives = 50/140 (35%)
Frame = +2
Query: 89 ERRQQRQHDPGCHDQLLRHATPVPARTDQSLQPERAVPSAASIQCRRQQQRDGTSTMKXX 268
+++QQ+Q Q + P P + Q Q + Q ++QQQ+ +
Sbjct: 21 QQQQQQQQQQQQQQQQQQQQQPQPQQQQQQQQEQE--QQQQQQQQQQQQQQQQQQQQQQQ 78
Query: 269 XXXXXXXXXXXXXXXXXRPYNQWDYPGNQFNKHNPQKSTPNSVNMSTGSQKQVKCNRLTN 448
+ Q P Q +HN ++ N++N + S N +N
Sbjct: 79 HQQQQQQEQQQQQQQQQQQQQQQQQPHQQ--QHNNNSNSNNNINSNRNSNSSSNSNSNSN 136
Query: 449 CNQIKNDQADCSMNSLRSQN 508
N N+ + + NS + N
Sbjct: 137 NNSNSNNNINSNSNSNSNSN 156
>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 31.1 bits (67), Expect = 0.70
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = +2
Query: 338 DYPGNQFNKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNISP 517
D +NK +P STP + +K+ + K + S N + +P
Sbjct: 451 DSTPQDWNKEHPDLSTPKKTALVAEIKKEAEEEEEKEPKSEKKKRKRTSDNESEKEETTP 510
Query: 518 AKSKSGTYLSRKSKRTTE--DGRPK 586
+K K +K+K TE DG K
Sbjct: 511 SKLKKSKKDKKKAKEATEEDDGEEK 535
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/74 (20%), Positives = 38/74 (51%)
Frame = +2
Query: 359 NKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNISPAKSKSGT 538
++ NP+++ N+ + ++ ++ +N + +DQ++ S + + S ++S S
Sbjct: 407 SRRNPRETKTNTPRSRRSNSRKTPKSKKSNLSTAASDQSERSKSIASHASTSLSRSSSKR 466
Query: 539 YLSRKSKRTTEDGR 580
L R+S + + GR
Sbjct: 467 SLGRRSVESRKSGR 480
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -1
Query: 446 SSAGCT*LVSGFPSTCSRNSVWTSVDCVC*TDCLDSPIGCRASGDC--NIGYYS 291
++A CT + F C + V CV +C++ C S DC ++G YS
Sbjct: 184 ANALCTNIFGTFVCRCRKGFVGDGKTCVDKDECVEEDHDCAKSADCINSVGSYS 237
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 323 PYNQWDYPGNQF-NKHNPQKSTPNSVNMSTGSQKQVKCNR 439
PY W YPGNQ NK P ++ + ++ TGS +V R
Sbjct: 872 PYPYWQYPGNQAGNKTRPLRALRSPIH--TGSTLEVDRTR 909
>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 350 NQFNKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNISPAK-- 523
N+F K+ P TP+ + + TG Q C N+ ++ +C +N++P
Sbjct: 437 NRFGKYIPFTLTPSQLIVPTGFQDNFICEECVRSNETISN-VECEQEV--KENVTPLTGI 493
Query: 524 SKSGTYLSRKSKRTTEDG 577
S+ S K KR E G
Sbjct: 494 SRESIRASIKRKREEEMG 511
>SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +2
Query: 320 RPYNQWDYPGNQFNKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLR 499
+P N P NP+ + P+S S K N ++ + N ++ N+
Sbjct: 180 KPNNPSSNPKPNNPSSNPKPNNPSSNPKSNNPSSNPKPNNPSSNPKPNNPSSNPKSNNPS 239
Query: 500 SQNISPAKSKSGTYLSRKS 556
S +P + GTYL+RKS
Sbjct: 240 S---NPKPNNPGTYLNRKS 255
>SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 350 NQFNKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNISPAK-- 523
N+F K+ P TP+ + + TG Q C N+ ++ +C +N++P
Sbjct: 50 NRFGKYIPFTLTPSQLIVPTGFQDNFICEECVRSNETISN-VECEQEV--KENVTPLTGI 106
Query: 524 SKSGTYLSRKSKRTTEDG 577
S+ S K KR E G
Sbjct: 107 SRESIRASIKRKREEEMG 124
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Frame = -1
Query: 401 CSRNSVWTSVDCVC*TDCLDSPIGCRASGD--------CNIGYYSS*LGCIGDCSSLWR- 249
C NS WT + C DC + C + GD C+ GY S + DCSS
Sbjct: 62 CECNSGWTGISCAV-PDCA-AVSQCSSHGDCVASNTCRCHPGYQGSRCSEVADCSSFGNC 119
Query: 248 SHH--VVVDDG 222
S H V+D G
Sbjct: 120 SFHGECVIDRG 130
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 425 LVSGFPS-TCSRNSVWTSVDCVC*TDCLDSPIGCRASGDC 309
LVSG P + S + T V C C+ P CR S DC
Sbjct: 260 LVSGKPQPSASPSDKITKVGCGKTKACVSEPKNCRTSSDC 299
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 313 SPEALQPMGLSRQSVQQT--QSTEVHTEFREHVDGKPE 420
SPEALQ M ++SV Q ++++TE GKPE
Sbjct: 1264 SPEALQAMASLKESVTQVVMDVSQINTETGNLQSGKPE 1301
>SB_52559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +2
Query: 344 PGNQFNKHNPQKSTPNSVNMSTGSQKQVK--------CNRLTNCNQIKNDQAD--CSMNS 493
PG+++ NPQ S P + + ++K V+ C + +C I + C MN+
Sbjct: 65 PGHEYMYTNPQGSAPLTRDHVIYTEKSVRDVNTCSQYCELMPDCQSINFNPVSMVCEMNN 124
Query: 494 LRSQNISPAKSKSGTY 541
+ S + A +S +Y
Sbjct: 125 VTSSVVGSASRESFSY 140
>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 154 WCCVSQ*LVMTPRVMLPLLSTLIMDDLD 71
W CVS + MT ++ P+LS +I LD
Sbjct: 315 WLCVSPQVAMTTSLVFPILSAIIYAVLD 342
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 440 AGCT*LVSGFPSTCSRNSVWTSVDCVC*TDCLDSPIGCRASGDC--NIGYYS 291
A CT LV GF TC+ +T +C D D P C SG C IG Y+
Sbjct: 2103 ATCTDLVGGFVCTCALG--YTDHNCSTIIDNCD-PNPCNHSGICTNKIGNYT 2151
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +1
Query: 301 PILQSPEALQPMGLSRQSVQQTQSTEVHTE-FR-EHVDGKPETSQVQPADEL*PNQE--- 465
P + QP +Q Q +S + + FR + + +P S QP P Q+
Sbjct: 529 PFRADQQTQQPFQSGQQPHQPFRSVQQPQQPFRADQQNRQPFQSGQQPQQAFRPGQQPQQ 588
Query: 466 --RPGRL*HEQPEEPKHQPSE 522
RPG+ H+QP P+ QP +
Sbjct: 589 PSRPGQQ-HQQPFRPEQQPQQ 608
>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
Length = 816
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 513 LMFWLLRLFMLQSAWSFLIW--LQFVSRLHLTCFWLPV 406
L+F +L FML + W IW + F + H WL +
Sbjct: 288 LLFLMLMFFMLVAHWMACIWYMIGFSEQKHKQTSWLSI 325
>SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6)
Length = 287
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 343 SRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADE 447
S QS++ + + + T + D KP SQV P E
Sbjct: 45 SHQSIRSSHTPQNATPLQARADSKPAHSQVDPTPE 79
>SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +1
Query: 343 SRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPEEPKHQPSE 522
+RQ+ +T + + ++ D +P + + +P D+ Q RP R + + + +
Sbjct: 337 ARQASLKTSKLQDQNK-QDKQDARPASRRTKPQDQDNTRQVRPARRKQQDKQAARTRQDS 395
Query: 523 VQVWDISQSQIEANNGRRKT 582
+ Q + A RRKT
Sbjct: 396 CETEPQEQDKKAARQARRKT 415
>SB_41328| Best HMM Match : NLPC_P60 (HMM E-Value=5.8)
Length = 155
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +1
Query: 343 SRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPEEPKHQPSE 522
S + + + E + +EH D K + S+++ D + E+ G+L EP +P +
Sbjct: 13 SDPELARDRDREYKLKLKEHADKKAKESEIKEGDTVLMRNEQQGKL------EPNFRPEK 66
Query: 523 VQVWDISQSQI 555
+V + + S I
Sbjct: 67 YKVVNKNGSDI 77
>SB_36659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 98 QQRQHDPGCHDQLLRHATPVPARTDQSL 181
+QRQH PGC +LLR + +T +L
Sbjct: 91 EQRQHRPGCLGKLLRGTSQCCPKTTPAL 118
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 11 YDELPTDELQPEQPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPV-PARTDQSLQP 187
Y +P + +P S VV V D+ + D G D+ R+ TP R+D + P
Sbjct: 664 YKGIPRSDARPTPETSTSTVV--VVDDESSEDSSDKG--DE--RNVTPRRDKRSDSNATP 717
Query: 188 ERAVPSAASIQCRRQQQRDGTST 256
R S ++ RR ++ D +T
Sbjct: 718 RRDKRSDSNATLRRDKKSDSNAT 740
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,967
Number of Sequences: 59808
Number of extensions: 351903
Number of successful extensions: 1278
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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