Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00329
(593 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L31785-1|AAA65937.1| 579|Homo sapiens orphan nuclear hormone re... 33 0.58
D16815-1|BAA20088.1| 579|Homo sapiens EAR-1r protein. 33 0.58
BC070035-1|AAH70035.1| 408|Homo sapiens NR1D2 protein protein. 33 0.58
BC045613-1|AAH45613.1| 579|Homo sapiens nuclear receptor subfam... 33 0.58
BC044948-1|AAH44948.1| 425|Homo sapiens synaptotagmin VI protein. 33 0.58
AL162594-4|CAM27152.1| 510|Homo sapiens synaptotagmin VI protein. 33 0.58
AL162594-2|CAI18964.1| 425|Homo sapiens synaptotagmin VI protein. 33 0.58
AB209091-1|BAD92328.1| 549|Homo sapiens Orphan nuclear receptor... 33 0.58
CR457434-1|CAG33715.1| 579|Homo sapiens NR1D2 protein. 32 1.8
AF538685-1|AAN15137.1| 3526|Homo sapiens ALFY protein. 31 2.3
AC095046-1|AAY40903.1| 2407|Homo sapiens unknown protein. 31 2.3
AK023787-1|BAB14678.1| 858|Homo sapiens protein ( Homo sapiens ... 30 5.4
AL645608-13|CAI15575.2| 2045|Homo sapiens agrin protein. 30 7.1
AK027718-1|BAB55320.1| 840|Homo sapiens protein ( Homo sapiens ... 30 7.1
AF016903-1|AAC39776.1| 2026|Homo sapiens agrin precursor protein. 30 7.1
AB191264-1|BAD52440.1| 2045|Homo sapiens agrin protein. 30 7.1
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein. 29 9.4
>L31785-1|AAA65937.1| 579|Homo sapiens orphan nuclear hormone
receptor BD73 protein.
Length = 579
Score = 33.5 bits (73), Expect = 0.58
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 380 STPNSVNMSTGSQKQVKCNRLTNCNQI-KNDQADCSMNSLRSQNISPAKSKSG 535
S+PNS N T K L N I KND+ DCSM + +S KS SG
Sbjct: 41 SSPNSSNSDTNGNP--KNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSG 91
>D16815-1|BAA20088.1| 579|Homo sapiens EAR-1r protein.
Length = 579
Score = 33.5 bits (73), Expect = 0.58
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 380 STPNSVNMSTGSQKQVKCNRLTNCNQI-KNDQADCSMNSLRSQNISPAKSKSG 535
S+PNS N T K L N I KND+ DCSM + +S KS SG
Sbjct: 42 SSPNSSNSDTNGNP--KNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSG 92
>BC070035-1|AAH70035.1| 408|Homo sapiens NR1D2 protein protein.
Length = 408
Score = 33.5 bits (73), Expect = 0.58
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 380 STPNSVNMSTGSQKQVKCNRLTNCNQI-KNDQADCSMNSLRSQNISPAKSKSG 535
S+PNS N T K L N I KND+ DCSM + +S KS SG
Sbjct: 42 SSPNSSNSDTNGNP--KNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSG 92
>BC045613-1|AAH45613.1| 579|Homo sapiens nuclear receptor subfamily
1, group D, member 2 protein.
Length = 579
Score = 33.5 bits (73), Expect = 0.58
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 380 STPNSVNMSTGSQKQVKCNRLTNCNQI-KNDQADCSMNSLRSQNISPAKSKSG 535
S+PNS N T K L N I KND+ DCSM + +S KS SG
Sbjct: 42 SSPNSSNSDTNGNP--KNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSG 92
>BC044948-1|AAH44948.1| 425|Homo sapiens synaptotagmin VI protein.
Length = 425
Score = 33.5 bits (73), Expect = 0.58
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 340 LSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPE 498
L RQ+ + ST HT F+ H+ + S V +EL P E+P + +PE
Sbjct: 74 LQRQTTEPASSTR-HTSFKRHLPRQMHVSSVDYGNELPPAAEQPTSIGRIKPE 125
>AL162594-4|CAM27152.1| 510|Homo sapiens synaptotagmin VI protein.
Length = 510
Score = 33.5 bits (73), Expect = 0.58
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 340 LSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPE 498
L RQ+ + ST HT F+ H+ + S V +EL P E+P + +PE
Sbjct: 159 LQRQTTEPASSTR-HTSFKRHLPRQMHVSSVDYGNELPPAAEQPTSIGRIKPE 210
>AL162594-2|CAI18964.1| 425|Homo sapiens synaptotagmin VI protein.
Length = 425
Score = 33.5 bits (73), Expect = 0.58
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 340 LSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPE 498
L RQ+ + ST HT F+ H+ + S V +EL P E+P + +PE
Sbjct: 74 LQRQTTEPASSTR-HTSFKRHLPRQMHVSSVDYGNELPPAAEQPTSIGRIKPE 125
>AB209091-1|BAD92328.1| 549|Homo sapiens Orphan nuclear receptor
NR1D2 variant protein.
Length = 549
Score = 33.5 bits (73), Expect = 0.58
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 380 STPNSVNMSTGSQKQVKCNRLTNCNQI-KNDQADCSMNSLRSQNISPAKSKSG 535
S+PNS N T K L N I KND+ DCSM + +S KS SG
Sbjct: 11 SSPNSSNSDTNGNP--KNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSG 61
>CR457434-1|CAG33715.1| 579|Homo sapiens NR1D2 protein.
Length = 579
Score = 31.9 bits (69), Expect = 1.8
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 347 GNQFNKHNPQKSTPNSVNMSTGS-QKQVKCNRLTNCNQI-KNDQADCSMNSLRSQNISPA 520
G++ + + S P+S N S K L N I KND+ DCSM + +S
Sbjct: 28 GSENSFQSSSSSVPSSPNSSNSDINGNPKNGDLANIEGILKNDRIDCSMKTSKSSAPGMT 87
Query: 521 KSKSG 535
KS SG
Sbjct: 88 KSHSG 92
>AF538685-1|AAN15137.1| 3526|Homo sapiens ALFY protein.
Length = 3526
Score = 31.5 bits (68), Expect = 2.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 77 IVHDERRQQRQHDPGCHDQLLRHATPVPARTDQSLQP 187
+VH ER QQ + G H +LL+ + A D SL P
Sbjct: 885 LVHTERNQQVMCEAGLHARLLQRCSAALADEDHSLHP 921
>AC095046-1|AAY40903.1| 2407|Homo sapiens unknown protein.
Length = 2407
Score = 31.5 bits (68), Expect = 2.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 77 IVHDERRQQRQHDPGCHDQLLRHATPVPARTDQSLQP 187
+VH ER QQ + G H +LL+ + A D SL P
Sbjct: 885 LVHTERNQQVMCEAGLHARLLQRCSAALADEDHSLHP 921
>AK023787-1|BAB14678.1| 858|Homo sapiens protein ( Homo sapiens
cDNA FLJ13725 fis, clone PLACE3000009, weakly similar to
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (EC
2.7.7.6). ).
Length = 858
Score = 30.3 bits (65), Expect = 5.4
Identities = 37/132 (28%), Positives = 47/132 (35%), Gaps = 13/132 (9%)
Frame = +1
Query: 94 STTAAT*PGVS*PVTATRNTSARPHRPIITTRTCS------------TLSRLHTMPSSTT 237
ST +A S P T T+ H+PII+T T + T S HTMPS T
Sbjct: 190 STYSAITTTHSAPSPLTHTTTGSTHKPIISTLTTTGPTLNIIGPVQTTTSPTHTMPSPTH 249
Query: 238 T*WDLHNEEQSPIQPSYDE**PILQSPEALQPMGLSRQSVQQTQSTEVH-TEFREHVDGK 414
T + SP SP S S+ QT ++ H T H
Sbjct: 250 TTASPTHTSTSPTHTPTSPTHKTSMSPPTTTSPTPSGMSLVQTATSPTHPTTSPTHPTTS 309
Query: 415 PETSQVQPADEL 450
P V P+ L
Sbjct: 310 PILINVSPSTSL 321
>AL645608-13|CAI15575.2| 2045|Homo sapiens agrin protein.
Length = 2045
Score = 29.9 bits (64), Expect = 7.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 434 CT*LVSGFPSTCSRNSVWTSVDCVC*TDCLDSPIGCRASGD 312
C+ + F STC+R++ + C+C C +P G D
Sbjct: 248 CSNVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSD 288
>AK027718-1|BAB55320.1| 840|Homo sapiens protein ( Homo sapiens
cDNA FLJ14812 fis, clone NT2RP4002081, weakly similar to
TRANSCRIPTION INITIATION FACTOR IIA ALPHA AND BETA
CHAINS. ).
Length = 840
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 41 PEQPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTDQSLQPERA 196
P+ P V ++ +R+QQ+QH P Q ++ P R +QP+++
Sbjct: 7 PQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQQVQVQVQQPQRVQMQVQPQQS 58
>AF016903-1|AAC39776.1| 2026|Homo sapiens agrin precursor protein.
Length = 2026
Score = 29.9 bits (64), Expect = 7.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 434 CT*LVSGFPSTCSRNSVWTSVDCVC*TDCLDSPIGCRASGD 312
C+ + F STC+R++ + C+C C +P G D
Sbjct: 229 CSNVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSD 269
>AB191264-1|BAD52440.1| 2045|Homo sapiens agrin protein.
Length = 2045
Score = 29.9 bits (64), Expect = 7.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 434 CT*LVSGFPSTCSRNSVWTSVDCVC*TDCLDSPIGCRASGD 312
C+ + F STC+R++ + C+C C +P G D
Sbjct: 248 CSNVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSD 288
>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
Length = 2448
Score = 29.5 bits (63), Expect = 9.4
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 91 ASTTAAT*PGVS*PVTATRNTSARPHRPIITTRTCS--TLSRLHTMPSSTTT 240
++T+AAT +S P T+T + P++TT T S T P+ TT+
Sbjct: 2315 STTSAATTSTISAPTTSTTSVPGTTPSPVLTTSTTSAPTTRTTSASPAGTTS 2366
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,078,779
Number of Sequences: 237096
Number of extensions: 1634172
Number of successful extensions: 8626
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8625
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -