Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00329
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z83128-3|CAB05637.1| 415|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical pr... 29 2.5
U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like pr... 29 2.5
AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear recep... 29 2.5
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 29 2.5
AF273812-1|AAG15161.1| 225|Caenorhabditis elegans nuclear recep... 29 2.5
AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear recep... 29 2.5
AF273809-1|AAG15158.1| 418|Caenorhabditis elegans nuclear recep... 29 2.5
AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical ... 29 2.5
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 3.3
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 3.3
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 3.3
U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain (pr... 28 4.4
U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain (pr... 28 4.4
U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain (pr... 28 4.4
U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain (pr... 28 4.4
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 28 5.8
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 28 5.8
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 28 5.8
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 28 5.8
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 28 5.8
AF016449-11|AAG23992.1| 353|Caenorhabditis elegans Serpentine r... 28 5.8
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 27 7.6
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 27 7.6
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 27 7.6
U10438-8|AAU87835.1| 627|Caenorhabditis elegans Hypothetical pr... 27 7.6
AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like ... 27 7.6
>U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical
protein C15B12.2 protein.
Length = 269
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 522 FAGLMFWLLRLFMLQSAWSFLIWLQFVSRLHLTC 421
F G MFW + F+ W+ L+W+ + H TC
Sbjct: 57 FCGHMFWYILTFITYLVWTLLLWIPCL--YHYTC 88
>Z83128-3|CAB05637.1| 415|Caenorhabditis elegans Hypothetical
protein W01D2.2b protein.
Length = 415
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 183 CNDWSVRAGTGVACRSNWS*HP 118
C+ WS +AG C SN S HP
Sbjct: 249 CSTWSAKAGCNGVCYSNGSYHP 270
>Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical
protein W01D2.2a protein.
Length = 412
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 183 CNDWSVRAGTGVACRSNWS*HP 118
C+ WS +AG C SN S HP
Sbjct: 249 CSTWSAKAGCNGVCYSNGSYHP 270
>U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like
protein protein 15 protein.
Length = 587
Score = 29.1 bits (62), Expect = 2.5
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +1
Query: 130 PVTATRNTSARPHRPIITTRTCSTLSRLHT-MPSSTTT*WDLHNEEQSPIQPSYDE**PI 306
P+ ++T++R I T ST +L T P +T + S ++PS P+
Sbjct: 89 PIPTMQSTASR----ISTLTAASTFRQLRTGRPPPPST---QRSTATSSLKPSVTRARPV 141
Query: 307 LQSPEALQPMGLSRQSVQQTQSTEVH-TEFREHVDGK 414
Q P M L + + Q +S T+F EH K
Sbjct: 142 AQKPILPSKMALLEEKIAQLESAMAEATDFAEHQKSK 178
>AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 418
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 183 CNDWSVRAGTGVACRSNWS*HP 118
C+ WS +AG C SN S HP
Sbjct: 255 CSTWSAKAGCNGVCYSNGSYHP 276
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +2
Query: 392 SVNMSTGSQKQVK-----CNRLTNCNQIKNDQA-DCSMNSLRSQNISPAKSKSGTYLSRK 553
++ MST +QK + C+ L + A SMNSL+S+N+ P ++S RK
Sbjct: 1241 NITMSTDAQKVARSGPEACSSLIKTTKDGRKSARKRSMNSLKSKNV-PVVAQSARRAYRK 1299
Query: 554 SKRTTEDGR 580
+TT D +
Sbjct: 1300 RIKTTTDAK 1308
>AF273812-1|AAG15161.1| 225|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 225
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 183 CNDWSVRAGTGVACRSNWS*HP 118
C+ WS +AG C SN S HP
Sbjct: 62 CSTWSAKAGCNGVCYSNGSYHP 83
>AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 415
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 183 CNDWSVRAGTGVACRSNWS*HP 118
C+ WS +AG C SN S HP
Sbjct: 252 CSTWSAKAGCNGVCYSNGSYHP 273
>AF273809-1|AAG15158.1| 418|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 418
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 183 CNDWSVRAGTGVACRSNWS*HP 118
C+ WS +AG C SN S HP
Sbjct: 252 CSTWSAKAGCNGVCYSNGSYHP 273
>AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical
protein R02F11.4 protein.
Length = 630
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 316 PEALQPMGLSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQP 495
PE +P+G +R +T TE VDG+ E++ + P + P + + EQ
Sbjct: 417 PENFRPLGSTRSISTETVICSSRTEVSFTVDGRSESTPL-PRIDCAPLERK------EQE 469
Query: 496 EEPKHQPSEVQV 531
E +H PS V
Sbjct: 470 PEQRHTPSVADV 481
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +2
Query: 374 QKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNISPAKSKSGTYLSRK 553
+K + M G+QK K N+L+ NQ + D+ ++ L+++ I A+ K+ Y R
Sbjct: 2204 EKIRASRTGMEYGAQKLTKVNKLSTANQGRTDKMARNIAILKAK-IEQAREKA--YQIRL 2260
Query: 554 SKRTTEDG 577
S + E G
Sbjct: 2261 SLNSGERG 2268
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +2
Query: 374 QKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNISPAKSKSGTYLSRK 553
+K + M G+QK K N+L+ NQ + D+ ++ L+++ I A+ K+ Y R
Sbjct: 2204 EKIRASRTGMEYGAQKLTKVNKLSTANQGRTDKMARNIAILKAK-IEQAREKA--YQIRL 2260
Query: 554 SKRTTEDG 577
S + E G
Sbjct: 2261 SLNSGERG 2268
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +2
Query: 374 QKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNISPAKSKSGTYLSRK 553
+K + M G+QK K N+L+ NQ + D+ ++ L+++ I A+ K+ Y R
Sbjct: 2204 EKIRASRTGMEYGAQKLTKVNKLSTANQGRTDKMARNIAILKAK-IEQAREKA--YQIRL 2260
Query: 554 SKRTTEDG 577
S + E G
Sbjct: 2261 SLNSGERG 2268
>U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform b
protein.
Length = 849
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 502 PKHQPSEVQVWDISQSQIEANNGRR-KTQNN 591
P HQP E+Q ++S + ++ N+ + +T+NN
Sbjct: 349 PNHQPDELQRKELSSADLKLNDSKAVRTKNN 379
>U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform d
protein.
Length = 868
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 502 PKHQPSEVQVWDISQSQIEANNGRR-KTQNN 591
P HQP E+Q ++S + ++ N+ + +T+NN
Sbjct: 349 PNHQPDELQRKELSSADLKLNDSKAVRTKNN 379
>U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform a
protein.
Length = 915
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 502 PKHQPSEVQVWDISQSQIEANNGRR-KTQNN 591
P HQP E+Q ++S + ++ N+ + +T+NN
Sbjct: 349 PNHQPDELQRKELSSADLKLNDSKAVRTKNN 379
>U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform c
protein.
Length = 912
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 502 PKHQPSEVQVWDISQSQIEANNGRR-KTQNN 591
P HQP E+Q ++S + ++ N+ + +T+NN
Sbjct: 348 PNHQPDELQRKELSSADLKLNDSKAVRTKNN 378
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 332 QWDYPGNQFNKHNPQKSTPN--SVNMSTGSQKQVKCNRLTNCNQI 460
QW+ P N+ P + TP S N + Q+K NR NC Q+
Sbjct: 439 QWELPKNRLP---PGRITPEIYSANSEISIRLQIKENRNLNCRQL 480
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 94 STTAAT*PGVS*PVTATRNTSARPHRPIITTRTCSTLSRLHTMPSSTTT 240
+TT A + P T T + P TT T +T + T P++TTT
Sbjct: 191 TTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTT 239
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 47 QPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTD 172
+PC P A V I DER+++R +D +++R V + D
Sbjct: 5665 KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYD 5706
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 47 QPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTD 172
+PC P A V I DER+++R +D +++R V + D
Sbjct: 6194 KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYD 6235
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 47 QPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTD 172
+PC P A V I DER+++R +D +++R V + D
Sbjct: 5875 KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYD 5916
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 47 QPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTD 172
+PC P A V I DER+++R +D +++R V + D
Sbjct: 5665 KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYD 5706
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 47 QPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTD 172
+PC P A V I DER+++R +D +++R V + D
Sbjct: 6194 KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYD 6235
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 47 QPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTD 172
+PC P A V I DER+++R +D +++R V + D
Sbjct: 5875 KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYD 5916
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 47 QPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTD 172
+PC P A V I DER+++R +D +++R V + D
Sbjct: 5084 KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYD 5125
>AF016449-11|AAG23992.1| 353|Caenorhabditis elegans Serpentine
receptor, class t protein7 protein.
Length = 353
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -3
Query: 501 LLRLFMLQSAWSFLIWLQFVSRLHLTCFWLPVDMFTEFGVDFC 373
+L+L + + +++L V L L+C + +F G+ FC
Sbjct: 59 ILKLNLRVPVYQLMLFLSIVDMLQLSCNSIATGLFHIIGISFC 101
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 91 ASTTAAT*PGVS*PVTAT--RNTSARPHRPIITTRTCSTLSRLHTMPSSTTT 240
A T + T S P T R T + R + TT+T + R T P +TTT
Sbjct: 144 ARTISTTETTTSPPTTTVTPRTTRSSTARTVATTKTSPSTLRTTTKPPTTTT 195
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical protein
C31C9.6 protein.
Length = 965
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 268 SPIQPSYDE**PILQSPEALQPMGLSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPAD 444
SP+ PS DE P+++ + Q S + T+ ++ H++GK +Q+Q AD
Sbjct: 870 SPLPPSQDEINPLIEMVD--QSSSKSETQIPVTECSQ------NHLNGKGSAAQIQSAD 920
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 RQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPEEPK-HQ 513
+ Q+ Q + H + +E D +P D+ P+Q G ++ +EPK HQ
Sbjct: 117 QMDAQEPQEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQ 173
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 RQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPEEPK-HQ 513
+ Q+ Q + H + +E D +P D+ P+Q G ++ +EPK HQ
Sbjct: 117 QMDAQEPQEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQ 173
>U10438-8|AAU87835.1| 627|Caenorhabditis elegans Hypothetical
protein B0280.2 protein.
Length = 627
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 268 SPIQPSYDE**PILQSPEALQPMGLSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPAD 444
SP+ PS DE P+++ + Q S + T+ ++ H++GK +Q+Q AD
Sbjct: 532 SPLPPSQDEINPLIEMVD--QSSSKSETQIPVTECSQ------SHLNGKGSAAQIQSAD 582
>AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like
protein-15 protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.6
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +1
Query: 130 PVTATRNTSARPHRPIITTRTCSTLSRLHT-MPSSTTT*WDLHNEEQSPIQPSYDE**PI 306
P+ ++T++R I T S+ +L T P +T + S ++PS P+
Sbjct: 89 PIPTMQSTASR----ISTLTAASSFRQLRTGRPPPPST---QRSTATSSLKPSVTRARPV 141
Query: 307 LQSPEALQPMGLSRQSVQQTQSTEVH-TEFREHVDGK 414
Q P M L + + Q +S T+F EH K
Sbjct: 142 AQKPILPSKMALLEEKIAQLESAMAEATDFAEHQKSK 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,559,292
Number of Sequences: 27780
Number of extensions: 252809
Number of successful extensions: 1016
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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