Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00329
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.74 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 98  QQRQHDPGCHDQLLRHATPVPARTDQSLQPERAVPSAASIQCRRQQQRDGTST 256
           QQ  H    H Q    A P   +  Q  QP++        Q ++QQQ+ G  T
Sbjct: 812 QQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQ----QQQQQQQQRGPMT 860



 Score = 24.2 bits (50), Expect = 0.98
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 148 NTSARPHRPIITTRTCSTLSRLHTMPSSTTT 240
           +T + PH P     T +T++   T  ++TTT
Sbjct: 643 STHSHPHEPGAPATTITTITTTTTTTTTTTT 673



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 418  ETSQVQPADEL*PNQERPGRL*HEQPEEPKHQPSEVQ 528
            +T Q QP  +    Q++  +   +QP++ + QP + Q
Sbjct: 1499 KTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQ 1535



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +2

Query: 20   LPTDELQPEQPCSPDAVV*IVHDERRQQRQHDPGCHDQLLRHATPVPARTDQSLQPERAV 199
            +PTD+   +  C  D+ + + H  ++ Q+Q  P    Q  +   P      QS QP++  
Sbjct: 1479 VPTDK---KSAC--DSKLIVDHSSQKTQQQQ-PQQQQQQQQQQQP----QQQSQQPQQQQ 1528

Query: 200  PSAASIQCRRQQQR 241
            P     Q ++QQQ+
Sbjct: 1529 PQPQQQQQQQQQQQ 1542


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 137 VTGHDTPGHVAAVVDAHHG 81
           VT  DTPGH A +   H G
Sbjct: 195 VTFLDTPGHAAFISMRHRG 213


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +1

Query: 211 LHTMPSSTTT*WDLHNEEQSPI--QPSYDE**PILQSPE--ALQPMGLSRQSVQQTQSTE 378
           LHTM SS T   D H  +++ +  + + D    ++ +PE   L P G S  S     ++ 
Sbjct: 336 LHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSR 395

Query: 379 VHT-EFREHVDGKPETSQ 429
            H+ +   H  G    +Q
Sbjct: 396 GHSGQSSSHHHGSKSWTQ 413


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 383 WTSVDCVC*TDCLDSPIGCRASGDCNIGYYSS*LGCIGDCSSLWRSHHVVVDDG 222
           W S   V   + + SP+G  +S +           C G+ +SL   HHV    G
Sbjct: 474 WGSASDVTLDEAVKSPLGSVSSTEST---------CSGEVASLTEYHHVAPPSG 518



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 131 QLLRHATPVPARTDQSLQPERAVPSAASI 217
           QL  H T  PAR+  S       P  AS+
Sbjct: 670 QLHLHLTSPPARSPSSQAQASQCPQTASL 698


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +1

Query: 358 QQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGR-L*HEQPEEPKHQ 513
           ++T    + T     V G P  S ++P  E+  N    G    + + EEP  +
Sbjct: 272 KKTMELHIKTHSDSSVVGSPRDSPIEPEIEISQNSVSTGSDKENHKTEEPNDE 324


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 377 KSTPNSVNMSTGSQKQVKCNRLTN 448
           K  PN V+ S G+   V+C    N
Sbjct: 7   KEPPNRVDFSNGTGAVVECQARGN 30


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 443 TNCNQIKNDQADCSMNSLRSQN 508
           T CN ++   + CS  S+   N
Sbjct: 353 TKCNTLERTPSKCSQTSVHYSN 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,793
Number of Sequences: 438
Number of extensions: 2905
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)