Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00329
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44880.1 68414.m05142 Ulp1 protease family protein similar to...    31   0.58 
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P...    29   3.1  
At3g17550.1 68416.m02241 NLI interacting factor (NIF) family pro...    28   4.1  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    28   5.4  
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea...    28   5.4  
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ...    28   5.4  
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain...    27   7.1  
At4g32860.1 68417.m04677 expressed protein                             27   9.4  
At2g30690.1 68415.m03742 expressed protein contains Pfam profile...    27   9.4  

>At1g44880.1 68414.m05142 Ulp1 protease family protein similar to
           At5g28170, At1g35110, At3g42530, At4g19320, At5g36020,
           At4g03970, At3g43010, At2g10350; contains Pfam profile
           PF02902: Ulp1 protease family, C-terminal catalytic
           domain
          Length = 1038

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 316 PEALQPMGLSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQE 465
           P+  + M +  QS     S++ HT   EHV G+PE +Q  P D L  +Q+
Sbjct: 473 PKRKKTMEVPIQSQTPQTSSQSHT-LSEHVIGQPEVAQQVPDDHLDKSQD 521


>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to  At5g28170, At1g35110,
           At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
           At2g10350
          Length = 1043

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 349 QSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQE 465
           QS     S++ HT   EHV G+PE +Q  P D L   Q+
Sbjct: 408 QSQTSETSSQSHT-LPEHVFGQPEVAQQVPDDHLDKTQD 445


>At3g17550.1 68416.m02241 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 296

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 198 TARSGCNDWSVRAGTGVACRS 136
           ++RS C  W VR G  +AC+S
Sbjct: 24  SSRSSCGHWYVRYGVCIACKS 44


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 501 LLRLFM-LQSAWSFLIWLQFVSRLHLTCFWLPVD 403
           LLRLF  L    S L +LQ+VSR +L   W P+D
Sbjct: 166 LLRLFSPLNPIPSQLRYLQYVSRRNLVSEWPPLD 199


>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400); WDVCF
           variant 1 (gi:12006981) [Mus musculus]
          Length = 386

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = +1

Query: 340 LSRQSVQQTQSTEVHTEFREHVDGKPETSQVQPADEL*PNQERPGRL*HEQPEEPK---- 507
           L ++     Q  E H+   +  DG  +T  VQ AD+   ++E  G L  +   E      
Sbjct: 117 LVKKPKNSLQEAESHSRGCDEQDGG-DTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVA 175

Query: 508 ---HQPSEVQVWDIS 543
               QP+EV++WD++
Sbjct: 176 VVGEQPTEVEIWDLN 190


>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to fizzy-related
           protein (GI:5813825) Drosophila melanogaster,
           PID:g2326419;
          Length = 518

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 428 KCNRLTNCNQIKNDQADCSMNSLRSQNISPAKSKSGTYLSRKSKRTTEDGR 580
           + NRL N NQ ++        S+ S    P++S S   L   S   ++DG+
Sbjct: 37  RINRLINANQSQSPSPSSLSRSIYSDRFIPSRSGSNFALFDLSPSPSKDGK 87


>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related low similarity to clathrin assembly
           protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
           profile PF01417: ENTH domain
          Length = 591

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 397 EHVDGKPETSQVQPADEL*PNQERPGRL*HEQPEEPKHQPSEVQVWDISQSQIEANNGRR 576
           E++   P++  VQ   E    +E       EQPEEP  + ++ +  +  Q  IE      
Sbjct: 304 EYIKEAPQSGSVQKKLEYQEKEEEEQEQEEEQPEEPAEEENQNENTENDQPLIEEEEEEP 363

Query: 577 KTQ 585
           K +
Sbjct: 364 KEE 366


>At4g32860.1 68417.m04677 expressed protein
          Length = 193

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 133 VTATRNTSARPHRPIITTRTCSTLSRLHTMPSSTTT*WDLH 255
           V+  R ++   +RP+I  R      R +T+P    + WD H
Sbjct: 106 VSKGRRSNGSHNRPLINKRQRQAYIRYNTLPKVRDSIWDRH 146


>At2g30690.1 68415.m03742 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593; expression
           supported by MPSS
          Length = 788

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 540 YVPDLDFAGLMFWLLRLFMLQSAWSFL-IWLQFVSRLHLTCF 418
           + P L +A   ++L+ L  + +  S+L +W     RL + CF
Sbjct: 15  FAPVLTYAACEWFLILLMFIDALLSYLLVWFARYCRLQMPCF 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,005
Number of Sequences: 28952
Number of extensions: 225601
Number of successful extensions: 731
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)