Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00328
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   28   7.1  
SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 601  CTRFRWEQSRPRVFPTVVNFYCFGALI*LLRSW 503
            CTR  W+Q++ ++ PT   F+    L  L R W
Sbjct: 3244 CTRILWQQTKIKMLPTPAKFHYIFNLRDLSRIW 3276


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = -2

Query: 722 NYSKFRK--LKYSFGTNLKHRKKIGNQYSISLN*LHLSFKLELHPF*VGAESAPRVPNCS 549
           NYS+  K      FG    H    G  ++I  +   L   L+     +   ++PR+ +C 
Sbjct: 144 NYSQLDKEAAAIMFGVRKFHSYLYGRSFTIYTDHKPLLGLLQSTKQ-IPTSASPRILSCQ 202

Query: 548 ELLLLWGSHLTFKKLGR 498
           +  LLWGS +     GR
Sbjct: 203 DGCLLWGSRVVIPPQGR 219


>SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 87  NSEVAVDKVGDENKGDAKS 143
           NSE+  DKV DE KGD+ S
Sbjct: 2   NSEIPCDKVTDEPKGDSTS 20


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,651,406
Number of Sequences: 59808
Number of extensions: 218634
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)