Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00327
(508 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC095424-1|AAH95424.1| 132|Homo sapiens ribosomal protein S12 p... 102 8e-22
BC071930-1|AAH71930.1| 132|Homo sapiens ribosomal protein S12 p... 102 8e-22
BC017321-1|AAH17321.1| 132|Homo sapiens ribosomal protein S12 p... 102 8e-22
AL137783-3|CAC12946.1| 132|Homo sapiens ribosomal protein S12 p... 102 8e-22
AB061840-1|BAB79478.1| 132|Homo sapiens ribosomal protein S12 p... 102 8e-22
X53505-1|CAA37582.1| 132|Homo sapiens ribosomal protein S12 pro... 100 3e-21
M60974-1|AAA35863.1| 165|Homo sapiens growth arrest and DNA-dam... 34 0.33
L24498-1|AAA72045.1| 165|Homo sapiens gadd45 protein. 34 0.33
BC011757-1|AAH11757.1| 165|Homo sapiens growth arrest and DNA-d... 34 0.33
AY135686-1|AAM88884.1| 165|Homo sapiens growth arrest and DNA-d... 34 0.33
AL136120-2|CAI23494.1| 165|Homo sapiens growth arrest and DNA-d... 34 0.33
BC034968-1|AAH34968.1| 538|Homo sapiens jub, ajuba homolog (Xen... 29 9.3
BC009006-1|AAH09006.1| 325|Homo sapiens TMEM30A protein protein. 29 9.3
BC007580-1|AAH07580.1| 538|Homo sapiens JUB protein protein. 29 9.3
AY169959-1|AAO37641.1| 538|Homo sapiens ajuba protein. 29 9.3
AL080250-4|CAI19900.1| 361|Homo sapiens transmembrane protein 3... 29 9.3
AK001718-1|BAA91859.1| 361|Homo sapiens protein ( Homo sapiens ... 29 9.3
>BC095424-1|AAH95424.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 102 bits (244), Expect = 8e-22
Identities = 41/59 (69%), Positives = 53/59 (89%)
Frame = +2
Query: 260 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 436
EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 98.3 bits (234), Expect = 1e-20
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 66 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 245
I +G MDVN ALQEVLKTALIH GL G+ EAAKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 246 QALATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 359
+AL + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>BC071930-1|AAH71930.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 102 bits (244), Expect = 8e-22
Identities = 41/59 (69%), Positives = 53/59 (89%)
Frame = +2
Query: 260 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 436
EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 98.3 bits (234), Expect = 1e-20
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 66 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 245
I +G MDVN ALQEVLKTALIH GL G+ EAAKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 246 QALATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 359
+AL + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>BC017321-1|AAH17321.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 102 bits (244), Expect = 8e-22
Identities = 41/59 (69%), Positives = 53/59 (89%)
Frame = +2
Query: 260 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 436
EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 98.3 bits (234), Expect = 1e-20
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 66 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 245
I +G MDVN ALQEVLKTALIH GL G+ EAAKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 246 QALATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 359
+AL + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>AL137783-3|CAC12946.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 102 bits (244), Expect = 8e-22
Identities = 41/59 (69%), Positives = 53/59 (89%)
Frame = +2
Query: 260 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 436
EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 98.3 bits (234), Expect = 1e-20
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 66 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 245
I +G MDVN ALQEVLKTALIH GL G+ EAAKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 246 QALATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 359
+AL + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>AB061840-1|BAB79478.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 102 bits (244), Expect = 8e-22
Identities = 41/59 (69%), Positives = 53/59 (89%)
Frame = +2
Query: 260 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 436
EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 98.3 bits (234), Expect = 1e-20
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 66 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 245
I +G MDVN ALQEVLKTALIH GL G+ EAAKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 246 QALATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 359
+AL + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>X53505-1|CAA37582.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 100 bits (239), Expect = 3e-21
Identities = 40/59 (67%), Positives = 52/59 (88%)
Frame = +2
Query: 260 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 436
EHQI L+KVD+NKKLGEW GLCKID++G RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 94.7 bits (225), Expect = 2e-19
Identities = 50/98 (51%), Positives = 61/98 (62%)
Frame = +3
Query: 66 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 245
I +G MDVN ALQEVLKTALIH GL G+ EAAKALDKRQA LCV A NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVQASNCDEPMYVKLV 65
Query: 246 QALATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 359
+AL + + ++ K L + ++ R K+
Sbjct: 66 EALLAEHQINLIKVDDNKKLGEWVGLCKIDREGNPRKV 103
>M60974-1|AAA35863.1| 165|Homo sapiens growth arrest and
DNA-damage-inducible protein protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE 224
V AL+EVL AL + G++EAAK L D VLC+LA + D+
Sbjct: 19 VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDD 65
>L24498-1|AAA72045.1| 165|Homo sapiens gadd45 protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE 224
V AL+EVL AL + G++EAAK L D VLC+LA + D+
Sbjct: 19 VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDD 65
>BC011757-1|AAH11757.1| 165|Homo sapiens growth arrest and
DNA-damage-inducible, alpha protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE 224
V AL+EVL AL + G++EAAK L D VLC+LA + D+
Sbjct: 19 VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDD 65
>AY135686-1|AAM88884.1| 165|Homo sapiens growth arrest and
DNA-damage-inducible, alpha protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE 224
V AL+EVL AL + G++EAAK L D VLC+LA + D+
Sbjct: 19 VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDD 65
>AL136120-2|CAI23494.1| 165|Homo sapiens growth arrest and
DNA-damage-inducible, alpha protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.33
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE 224
V AL+EVL AL + G++EAAK L D VLC+LA + D+
Sbjct: 19 VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDD 65
>BC034968-1|AAH34968.1| 538|Homo sapiens jub, ajuba homolog
(Xenopus laevis) protein.
Length = 538
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 362 RQFSLPCHPCQSCRDQPILQAFCCCQP 282
R + C+ C+ CR Q + CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513
>BC009006-1|AAH09006.1| 325|Homo sapiens TMEM30A protein protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 196 YVFWLRTVMKPHTRNLFRLWQRTSD 270
++ W+RT P R L+RL +R SD
Sbjct: 221 FIVWMRTAALPTFRKLYRLIERKSD 245
>BC007580-1|AAH07580.1| 538|Homo sapiens JUB protein protein.
Length = 538
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 362 RQFSLPCHPCQSCRDQPILQAFCCCQP 282
R + C+ C+ CR Q + CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513
>AY169959-1|AAO37641.1| 538|Homo sapiens ajuba protein.
Length = 538
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 362 RQFSLPCHPCQSCRDQPILQAFCCCQP 282
R + C+ C+ CR Q + CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513
>AL080250-4|CAI19900.1| 361|Homo sapiens transmembrane protein 30A
protein.
Length = 361
Score = 29.1 bits (62), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 196 YVFWLRTVMKPHTRNLFRLWQRTSD 270
++ W+RT P R L+RL +R SD
Sbjct: 257 FIVWMRTAALPTFRKLYRLIERKSD 281
>AK001718-1|BAA91859.1| 361|Homo sapiens protein ( Homo sapiens
cDNA FLJ10856 fis, clone NT2RP4001547. ).
Length = 361
Score = 29.1 bits (62), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 196 YVFWLRTVMKPHTRNLFRLWQRTSD 270
++ W+RT P R L+RL +R SD
Sbjct: 257 FIVWMRTAALPTFRKLYRLIERKSD 281
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,904,299
Number of Sequences: 237096
Number of extensions: 1551788
Number of successful extensions: 3554
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3551
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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