Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00320
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    29   0.52 
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   0.91 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.6  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    27   2.1  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   3.7  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   3.7  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   3.7  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   6.4  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   6.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   8.5  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   8.5  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   8.5  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   8.5  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    25   8.5  

>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 17  DQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDA 142
           +  SE S S+S   +   E+S + +DSS     SED  + D+
Sbjct: 246 ESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDS 287



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 11  SIDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDA 142
           S  +GS+ SSS+S  + ES  +S +   SS   D   ++ ++D+
Sbjct: 157 SSSEGSDSSSSSSSSESES--SSEDNDSSSSSSDSESESSSEDS 198



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 11  SIDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDA 142
           S  +GS+ SSS+S  + ES  +S +   SS   D   ++ ++D+
Sbjct: 211 SSSEGSDSSSSSSSSESES--SSEDNDSSSSSSDSESESSSEDS 252



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 2   DRMSIDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDA 142
           D  S    SE  SS+      S  +  E   SSEG D S  + + ++
Sbjct: 127 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSES 173



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 2   DRMSIDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDA 142
           D  S    SE  SS+      S  +  E   SSEG D S  + + ++
Sbjct: 181 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSES 227


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 244

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 33 CLRAPPSARRRAWKRLV 83
          CLR+ PS +R AW+RLV
Sbjct: 7  CLRSFPSVQRTAWQRLV 23


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 286 SRAEPPLSAPP-LGENERAPRKSTVSFSL 369
           SRAE P +APP + E E + RK  +  ++
Sbjct: 505 SRAETPTAAPPQISEEEASQRKDAIKLAI 533


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 47  SQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDIRD 193
           SQ +EES         S+EGGDGS      D+  ++K S+  SG   +D
Sbjct: 85  SQTEEESDRKIDGTGSSAEGGDGS----GTDSISVIKKSFFKSGRKKKD 129


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 11   SIDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGID 184
            S D+G +     S+ +    + S E  + SE  + SEDA  +D +   ++   +SG D
Sbjct: 936  SDDEGDDSVEEVSEYEASDADPSDEEEEESE--EYSEDASEEDGYSESEVEDEESGED 991


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 457 PPTTEGRRASSASYSFYQV*RRRP----SAVVRQARK 359
           PP+     A+ AS S +QV R RP    SAV+  AR+
Sbjct: 244 PPSYISSEAAQASRSSFQVERHRPTPDNSAVIEAARR 280


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 439 YPLSWVEGLTGEVASGTQG--SQSDFYPLRP-TVTTQQASFRKYS 564
           YPL   +GLTG +  G+ G  + S  Y + P  +T+   + R Y+
Sbjct: 264 YPLIVTQGLTGGLPDGSNGTATNSSIYEISPYYLTSFDNNVRSYT 308


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 271 PPVCVSRAEPPLSAPPLGENERAPRKSTVSFS 366
           PP  V  + PP   PP   N  AP     S S
Sbjct: 49  PPPSVDHSAPPSGPPPSYSNSAAPATPAASAS 80


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 134 DDAHHLVKLSYHDSGIDIRDPLLHVT 211
           D AHH   LS+H+   D+   LL +T
Sbjct: 768 DQAHHYRNLSFHEYTFDLDVLLLQLT 793


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 274 PVCVSRAEPPLSAPPLGENERAPRKSTVSFSL 369
           P  ++ A P   APPL  +  A RKS  S +L
Sbjct: 557 PTIIAPALPSTPAPPLPSHPMATRKSLSSTNL 588


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 534 CDCRPKWVE 508
           CDCRP WV+
Sbjct: 129 CDCRPHWVD 137


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 14  IDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDI-R 190
           + +  E        K+ + E  +E     +  DG +D   D+A  L ++ ++ S  ++  
Sbjct: 23  VPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPH 82

Query: 191 DPLLHVT 211
           D  L  T
Sbjct: 83  DKFLWTT 89


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 11  SIDQGSEVSSSASQCKEESLEASRERADSS-EGGDGSEDAPADDA 142
           S  + S   SS+S+ +EE +  + E+ +SS E    SE    ++A
Sbjct: 108 SESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEA 152


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +1

Query: 250 RASADWVPPVCVSRAEPPLSAPPLGENERAPRKSTVSFSLDG 375
           R   DW     V   EPP+S   L   E       V FS DG
Sbjct: 258 REEKDWTVTSNVPNKEPPISVQLLHTLEHTSVICYVRFSADG 299


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 38  SSASQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVK 157
           S  S C+  S  +      S     G +D P D+  HLVK
Sbjct: 27  SRLSNCRYTSTSSKDTDTSSHMTHFGFKDVPEDEKEHLVK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,624
Number of Sequences: 5004
Number of extensions: 29002
Number of successful extensions: 130
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)