BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00320 (602 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41212| Best HMM Match : ICA69 (HMM E-Value=2.3) 31 0.72 SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7 SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1) 29 3.8 SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033) 29 3.8 SB_35974| Best HMM Match : PUF (HMM E-Value=0.00065) 28 5.1 SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31) 27 8.8 SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4) 27 8.8 >SB_41212| Best HMM Match : ICA69 (HMM E-Value=2.3) Length = 361 Score = 31.1 bits (67), Expect = 0.72 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +2 Query: 20 QGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLS 163 Q E + ++ +C R R ++GGDG E P D H V S Sbjct: 270 QEEESNFTSEECSSARRAQRRVRFQEADGGDGRELGPNGDEHEAVSAS 317 >SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 825 Score = 29.9 bits (64), Expect = 1.7 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -3 Query: 540 LSCDCRPKWVEVTLRALRAGRH-LASQALHPR 448 L CDC+ KW LR+ + RH + ++ LHP+ Sbjct: 243 LMCDCKIKWFGSWLRSRPSTRHTVRARCLHPQ 274 >SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 868 Score = 29.5 bits (63), Expect = 2.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 293 ARDTHTGGTQSADARYPHRCT 231 AR +T GT SAD R HRC+ Sbjct: 82 ARHVNTAGTASADTRCQHRCS 102 >SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1) Length = 572 Score = 28.7 bits (61), Expect = 3.8 Identities = 19/74 (25%), Positives = 31/74 (41%) Frame = +2 Query: 26 SEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDIRDPLLH 205 S SSS S C SL + + SS + + + +H +LS H + + + P +H Sbjct: 213 SASSSSLSSCSSSSLSSFSSSSSSSNSSNVKDHSRYQFSH---QLSPHPNSKNQKSPAIH 269 Query: 206 VTPNNTKKVYSDAD 247 + KV D Sbjct: 270 SVTQDVPKVVQKDD 283 >SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033) Length = 757 Score = 28.7 bits (61), Expect = 3.8 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +1 Query: 484 GTQGSQSDFYPLRPTVTTQQASFRKYSTGAVRWWVWAFS 600 G Q S L P + ++ RKY TG +RW WA S Sbjct: 650 GLQQSLPGLVDLLPGAKAE-STVRKYHTGWMRWRAWALS 687 >SB_35974| Best HMM Match : PUF (HMM E-Value=0.00065) Length = 422 Score = 28.3 bits (60), Expect = 5.1 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = +2 Query: 53 CKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDIRDPLLHVTPNNT-KK 229 C + + ++ + SE GD D + ++ + + H+ + + LLH P KK Sbjct: 63 CVFDKKKKKEKKEEKSESGDEDNDNASVSSYKVPPILSHEVSSHLMEKLLHTAPPKLYKK 122 Query: 230 VY 235 +Y Sbjct: 123 LY 124 >SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31) Length = 396 Score = 27.5 bits (58), Expect = 8.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 495 ALRAGRHLASQALHPRQRVG 436 AL GRH+ S+ LHPR G Sbjct: 347 ALPPGRHVVSRVLHPRMPTG 366 >SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 447 Score = 27.5 bits (58), Expect = 8.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 495 ALRAGRHLASQALHPRQRVG 436 AL GRH+ S+ LHPR G Sbjct: 351 ALPPGRHVVSRVLHPRMPTG 370 >SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4) Length = 420 Score = 27.5 bits (58), Expect = 8.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 495 ALRAGRHLASQALHPRQRVG 436 AL GRH+ S+ LHPR G Sbjct: 299 ALPPGRHVVSRVLHPRMPTG 318 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,392,943 Number of Sequences: 59808 Number of extensions: 253708 Number of successful extensions: 1324 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1320 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1463691625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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