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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00320
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41212| Best HMM Match : ICA69 (HMM E-Value=2.3)                     31   0.72 
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)                    29   3.8  
SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)                   29   3.8  
SB_35974| Best HMM Match : PUF (HMM E-Value=0.00065)                   28   5.1  
SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)                   27   8.8  
SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4)                27   8.8  

>SB_41212| Best HMM Match : ICA69 (HMM E-Value=2.3)
          Length = 361

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 20  QGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLS 163
           Q  E + ++ +C        R R   ++GGDG E  P  D H  V  S
Sbjct: 270 QEEESNFTSEECSSARRAQRRVRFQEADGGDGRELGPNGDEHEAVSAS 317


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 540 LSCDCRPKWVEVTLRALRAGRH-LASQALHPR 448
           L CDC+ KW    LR+  + RH + ++ LHP+
Sbjct: 243 LMCDCKIKWFGSWLRSRPSTRHTVRARCLHPQ 274


>SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 293 ARDTHTGGTQSADARYPHRCT 231
           AR  +T GT SAD R  HRC+
Sbjct: 82  ARHVNTAGTASADTRCQHRCS 102


>SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)
          Length = 572

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 26  SEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDIRDPLLH 205
           S  SSS S C   SL +    + SS   +  + +    +H   +LS H +  + + P +H
Sbjct: 213 SASSSSLSSCSSSSLSSFSSSSSSSNSSNVKDHSRYQFSH---QLSPHPNSKNQKSPAIH 269

Query: 206 VTPNNTKKVYSDAD 247
               +  KV    D
Sbjct: 270 SVTQDVPKVVQKDD 283


>SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)
          Length = 757

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 484 GTQGSQSDFYPLRPTVTTQQASFRKYSTGAVRWWVWAFS 600
           G Q S      L P    + ++ RKY TG +RW  WA S
Sbjct: 650 GLQQSLPGLVDLLPGAKAE-STVRKYHTGWMRWRAWALS 687


>SB_35974| Best HMM Match : PUF (HMM E-Value=0.00065)
          Length = 422

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 53  CKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDIRDPLLHVTPNNT-KK 229
           C  +  +   ++ + SE GD   D  +  ++ +  +  H+    + + LLH  P    KK
Sbjct: 63  CVFDKKKKKEKKEEKSESGDEDNDNASVSSYKVPPILSHEVSSHLMEKLLHTAPPKLYKK 122

Query: 230 VY 235
           +Y
Sbjct: 123 LY 124


>SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)
          Length = 396

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 495 ALRAGRHLASQALHPRQRVG 436
           AL  GRH+ S+ LHPR   G
Sbjct: 347 ALPPGRHVVSRVLHPRMPTG 366


>SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 495 ALRAGRHLASQALHPRQRVG 436
           AL  GRH+ S+ LHPR   G
Sbjct: 351 ALPPGRHVVSRVLHPRMPTG 370


>SB_23011| Best HMM Match : Mo-nitro_C (HMM E-Value=1.4)
          Length = 420

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 495 ALRAGRHLASQALHPRQRVG 436
           AL  GRH+ S+ LHPR   G
Sbjct: 299 ALPPGRHVVSRVLHPRMPTG 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,943
Number of Sequences: 59808
Number of extensions: 253708
Number of successful extensions: 1324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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