Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00320
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.33 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.57 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   3.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 517 VGRSHFASPACRTPPRQSGPPPTTEGRR 434
           +G    +  AC  PPRQ+ P     GRR
Sbjct: 382 MGHWQMSCVACSPPPRQTPPSRKESGRR 409


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 508 SHFASPACRTPPRQSGPPPTTEGRRASSA 422
           + FA+P   +PPR  G  PT+  + A+S+
Sbjct: 388 AQFATPCTPSPPRGPGGVPTSVIQAATSS 416


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 505 DFYPLRPTVTTQQASFRKYSTG 570
           DFYPL     T     R+Y  G
Sbjct: 32  DFYPLERGELTNSGKMREYQLG 53


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 505 DFYPLRPTVTTQQASFRKYSTG 570
           DFYPL     T     R+Y  G
Sbjct: 47  DFYPLERGELTNSGKMREYQLG 68


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 481 SGTQGSQSDFYPLRPTVTTQQASFRKYSTGAVRW 582
           S   G +SD   L+P  +++ + +RK     V W
Sbjct: 430 SSLSGDESDVVELQPVKSSKSSGWRKL-RNIVHW 462


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 259 QTHDIRIAVHLFGVVRRDVKERVADVDSG 173
           Q  D ++A+ LFG  +  +KER+    +G
Sbjct: 49  QPTDNKLAMKLFGSKKALMKERIRQKAAG 77


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 259 QTHDIRIAVHLFGVVRRDVKERVADVDSG 173
           Q  D ++A+ LFG  +  +KER+    +G
Sbjct: 49  QPTDNKLAMKLFGSKKALMKERIRQKAAG 77


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 259 QTHDIRIAVHLFGVVRRDVKERVADVDSG 173
           Q  D ++A+ LFG  +  +KER+    +G
Sbjct: 49  QPTDNKLAMKLFGSKKALMKERIRQKAAG 77


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 481 TPPRQSGPPPTTEGRRASSA 422
           TPP+ + PPP        SA
Sbjct: 337 TPPKPAPPPPPPSSSGPDSA 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,578
Number of Sequences: 438
Number of extensions: 2097
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)