Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00320
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi... 31 0.44
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.59
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 1.4
At1g12330.1 68414.m01425 expressed protein 30 1.4
At4g37420.1 68417.m05297 hypothetical protein contains Pfam prof... 29 2.4
At1g22000.1 68414.m02752 F-box family protein contains F-box dom... 29 2.4
At5g44313.1 68418.m05425 hypothetical protein 29 3.1
At1g55400.1 68414.m06336 hypothetical protein 29 3.1
At5g53440.1 68418.m06641 expressed protein 28 4.1
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 28 5.5
At4g17020.2 68417.m02567 transcription factor-related contains w... 28 5.5
At4g17020.1 68417.m02568 transcription factor-related contains w... 28 5.5
At2g40420.1 68415.m04985 amino acid transporter family protein s... 28 5.5
At2g26560.1 68415.m03186 patatin, putative similar to patatin-li... 28 5.5
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 27 7.2
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 27 7.2
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co... 27 9.6
At4g17620.1 68417.m02636 glycine-rich protein 27 9.6
At1g22080.1 68414.m02761 hypothetical protein 27 9.6
At1g17900.1 68414.m02216 hypothetical protein 27 9.6
>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1403
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 47 SQCKEESLEASRERADSSEGGDGSEDAPAD 136
S C+ ESLE S+ + + EGGD S + AD
Sbjct: 686 SFCQAESLEKSKFKTKADEGGDDSSNVSAD 715
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 514 GRSHFASPACRTPPRQSGPPPTTEGRRASSASYSF 410
GRS+ R+PPR S PP GRR+ S S +
Sbjct: 130 GRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGY 164
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 59 EESLEASRERAD-SSEGGDGSEDAPA--DDAHHLVKLSYHDSGIDIRDPLLHVTPNNTKK 229
EE +E E + + E GDG+ED + DD H ++ H +D+ + H + +K
Sbjct: 151 EEEIEVEEEAGEFADEIGDGAEDLDSEDDDDDHAIEEVKHGETVDVEEEEHHDVLHERRK 210
>At1g12330.1 68414.m01425 expressed protein
Length = 505
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 50 QCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDIRDPLLHVTPNNTKK 229
+C+E+ L+ R + ++ DG A + HH + + +++ PL H T+K
Sbjct: 28 ECEEDDLQEERYKNRATPSSDGGSSATPNHQHHR-RTNSNNNHQHTLTPLHHNGKPQTRK 86
Query: 230 VYSDAD 247
+ D D
Sbjct: 87 RHDDND 92
>At4g37420.1 68417.m05297 hypothetical protein contains Pfam profile
PF01697: Domain of unknown function
Length = 588
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 253 HDIRIAVHLFGVVRRDVKERVADVDSGVV 167
H + A+H FG+ +R+ + RVAD + GVV
Sbjct: 476 HSLYTAIHHFGL-KREYEWRVADTEEGVV 503
>At1g22000.1 68414.m02752 F-box family protein contains F-box domain
Pfam:PF00646
Length = 727
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 17 DQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDIRDP 196
++ ++ + QCKEESL+ S+E G E +H +++ +D +D+ D
Sbjct: 658 EEKQKLEAILQQCKEESLKMSKEL------GSRRELVQRCSSHKNIEMEENDR-LDMDDQ 710
Query: 197 LLHVTPNNTKKVYS 238
+ + NNT V S
Sbjct: 711 MSELDDNNTTAVSS 724
>At5g44313.1 68418.m05425 hypothetical protein
Length = 237
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 2 DRMS-IDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADD 139
DR+S +D+ +E +++ + E D+ E GDG +D DD
Sbjct: 93 DRVSNVDENNEAVDEQDDVEDDKTDEDEEEGDN-EDGDGYDDYQGDD 138
>At1g55400.1 68414.m06336 hypothetical protein
Length = 211
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 2 DRMS-IDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADD 139
DR+S +D+ +E +++ + E D+ E GDG +D DD
Sbjct: 104 DRVSNVDENNEAVDEQDDVEDDKTDEDEEEGDN-EDGDGYDDYQGDD 149
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 56 KEESLEASRERADSSEGGDGSEDAPADDAHHLVKLSYHDSGIDIRDPLLH 205
K+ S + + E A+ +G + E+A ADD + D + +PL+H
Sbjct: 1114 KDLSEDENMEEAEEKKGANDGEEAEADDGDGDGSVVVGDVSPKVTEPLVH 1163
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 284 THTGGTQSADARYPHRCTPFWCCS 213
T GG +S + R P + P++CC+
Sbjct: 20 TEWGGAKSKENRTPFKSLPYYCCA 43
>At4g17020.2 68417.m02567 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 462
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 128 PADDAHHLVKLSYHDSGIDIRDPLLHVTPNNTKKVYSDADIVRLR 262
PAD L++LS+H +G L NNT K +D +V+L+
Sbjct: 223 PADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQ 267
>At4g17020.1 68417.m02568 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 452
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 128 PADDAHHLVKLSYHDSGIDIRDPLLHVTPNNTKKVYSDADIVRLR 262
PAD L++LS+H +G L NNT K +D +V+L+
Sbjct: 223 PADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQ 267
>At2g40420.1 68415.m04985 amino acid transporter family protein
similar to neuronal glutamine transporter [Rattus
norvegicus] GI:6978016; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 440
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 513 PTSADSHNSTSVFSKVFNRRSSLVGLGVL 599
P+S+ S N S VFN +S+VG G++
Sbjct: 15 PSSSSSENHGSFAGAVFNISTSIVGAGIM 43
>At2g26560.1 68415.m03186 patatin, putative similar to patatin-like
latex allergen [Hevea brasiliensis][PMID:10589016];
contains patatin domain PF01734
Length = 407
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 469 GEVASGTQGSQSDFYPLRP 525
GEV + G SDF+P+RP
Sbjct: 229 GEVTNEISGGSSDFFPIRP 247
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 17 DQGSEVSSSASQCKEESLEASRERADSSEGGDGSE 121
D+ +E + +EE E S+ER+ SS GD SE
Sbjct: 87 DEEAEEEEEEEEEEEEEEEDSKERSPSSISGDQSE 121
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 29 EVSSSASQCKEESLEASRERADSSEGGDGSEDAP 130
+ SSS + KEE E +++ +SS G+G E+ P
Sbjct: 321 DASSSQDESKEEKPE-RKKKEESSSQGEGKEEEP 353
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 122 DAPADDAHHLVKLSYHDSGIDIRDPLLHVTPNNTKKVYSDADIVRL 259
D P+ D H L L+ D DP H+ NNTK++ + +L
Sbjct: 61 DHPSHDGHSLKLLT--TGAPDHTDPKCHLCGNNTKRLLFHCSVCQL 104
>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 695
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 83 ERADSSEGGDGSEDA-PADDAHHLVKLSYHDSGIDIRDPLLHVTP--NNTKKVYSDADIV 253
+++ E GD DA P+DDAHH +S + + H P NN KV +
Sbjct: 12 DKSKGDEKGDVVSDAHPSDDAHHQDGISNENVDVVGNAETDHQDPGDNNVDKVSQGEEAP 71
Query: 254 RLR 262
+R
Sbjct: 72 EIR 74
>At4g17620.1 68417.m02636 glycine-rich protein
Length = 544
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 2 DRMSIDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADDA 142
D S S+ SSS + S +S + S+ GGDG D D+
Sbjct: 19 DNDSRSSRSKSSSSGNASSSSSSSSSSSSSSSAAGGDGEGDGGGADS 65
>At1g22080.1 68414.m02761 hypothetical protein
Length = 475
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 6 ECPSIRAVRCLRAPPSARRRAWK 74
E P R +C R PPSA +R K
Sbjct: 159 EIPQFRQYKCRRYPPSAHKRKHK 181
>At1g17900.1 68414.m02216 hypothetical protein
Length = 184
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 2 DRMS-IDQGSEVSSSASQCKEESLEASRERADSSEGGDGSEDAPADD 139
DR+S +D+ +E +++ + + D+ E GDG +D DD
Sbjct: 61 DRVSNVDENNEAVDEQDNIEDDKTDEDEKEGDN-EDGDGYDDYQGDD 106
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,529,867
Number of Sequences: 28952
Number of extensions: 177158
Number of successful extensions: 938
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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