Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00318
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   3.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   3.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   6.3  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   8.3  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 519 FQVQTNYRHVYSNYNN 566
           F     Y   YSNYNN
Sbjct: 211 FNFNYQYNQAYSNYNN 226


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 519 FQVQTNYRHVYSNYNN 566
           F     Y   YSNYNN
Sbjct: 231 FNFNYQYNQAYSNYNN 246


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 484 VHTYTCELWHVYSKFKLTIGMYIPTTTMFP 573
           VH      WH +S F+ + G + P     P
Sbjct: 169 VHNSGTHFWHSHSGFQRSDGTFGPFIVRVP 198


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +3

Query: 657 TLTRSIDNDLWPVSVKLCMTCDI 725
           T+       LWP+S+ L  T  +
Sbjct: 11  TVANKFSGKLWPISIVLIYTVGV 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,515
Number of Sequences: 336
Number of extensions: 4119
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)