Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00318
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   4.0  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    26   6.9  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    25   9.2  

>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 221 KKIEMKFERSKSYIRINPSQIIKHNRFFESF*KVNLLPL 105
           +K+E K + ++ +   N SQ    N F E+F  V LLP+
Sbjct: 432 QKLEEKEDATECFFYKNVSQNTAKNNFLETFKNVMLLPV 470


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 312 LNCDTSCPTTSLGERNRENYSY 247
           LNC +SC TT L  R + + S+
Sbjct: 212 LNCSSSCKTTPLQSREKNSSSF 233


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 287 RQVSESAIGKIILIRQKRS--IFAKKIEMKFERSKSY 183
           R + +  +GK+ L+RQK +  +FA KI  K E  K +
Sbjct: 159 RLLGQGDVGKVYLVRQKSNHRLFAMKILNKREMIKRH 195


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +2

Query: 332 HTIVLCRIIKVEQTFILSHENSTIHAPATQNPHML*VYFLMRSIEYHANSAYTHT 496
           H I   +  K     ++S  NS+IH    +   +L  Y  ++++EY   S++  +
Sbjct: 181 HPITSVKTSKSASFSLISSLNSSIHLLDQETGKILKSYIGLKNMEYRVRSSFNQS 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,261
Number of Sequences: 5004
Number of extensions: 67772
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)