Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00318
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159...    29   5.4  
01_01_0241 + 1992553-1993231,1993820-1993918,1994611-1994649,199...    29   5.4  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    28   9.5  
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565...    28   9.5  

>01_05_0808 -
           25414486-25414677,25415114-25415290,25415839-25415928,
           25416016-25416081,25416170-25416240,25416375-25416450,
           25416567-25420098,25421464-25421834
          Length = 1524

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 288 TTSLGERNRENYSYKAEEIDIRKEN*NEIRTKQELYSN*PFADHKA 151
           TTSLGE N+EN + +A E+    E  ++I  +   + N    + KA
Sbjct: 735 TTSLGESNKENNNIEALEVPCADEMQSQILQEYHEFRNENIDEKKA 780


>01_01_0241 +
           1992553-1993231,1993820-1993918,1994611-1994649,
           1994806-1995857
          Length = 622

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 33  ALAPKRTNYIQMXRFTRAFRE 95
           +LAPKR NY ++ + TR+F++
Sbjct: 321 SLAPKRYNYSELKKITRSFKD 341


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 315 RLNCDTSCPTTSLGERNRENYSYKAEEIDIRKEN*NEIRTKQELYSN 175
           RLNCD+ C +TS  +     +S+   +I       NE+ + QE YS+
Sbjct: 517 RLNCDSECESTSAVD-TESMFSFSLYDISWPP---NEVESLQEKYSS 559


>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
            27456774-27456872,27456948-27457012,27457476-27457575,
            27458326-27458408,27458494-27458569,27458920-27459698
          Length = 1515

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 141  KSIVLYDLRRVNSNIALASFEFHFNFLCEYRSLLP 245
            K +++ D+R  N +  +   EFH    CE +  +P
Sbjct: 1202 KEVLVADIRLANRHAGIVDKEFHIPLFCEKKIQIP 1236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,485,020
Number of Sequences: 37544
Number of extensions: 372518
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)