Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00318
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               33   0.34 
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_17891| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)                   30   2.4  
SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_37796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 684 SHYLLNESKW*LCSTK-IKIIESCQAIRLSTQDPVQVKREHCCSWNIHAYS 535
           +HY+ N      C  + I I+E CQ +++    P  +++  CC+ N H Y+
Sbjct: 215 NHYIFNRRFHKCCHNQVIPILEQCQQMQVCGMKPYDMEKNACCN-NKHIYN 264


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 684 SHYLLNESKW*LCSTK-IKIIESCQAIRLSTQDPVQVKREHCCSWNIHAYS 535
           +HY+ N      C  + I I+E CQ +++    P  +++  CC+ N H Y+
Sbjct: 215 NHYIFNRRFHKCCHNQVIPILEQCQQMQVCGMKPYDMEKNACCN-NKHIYN 264


>SB_17891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 325 TLSYYCALSYYQSRTDIHLITRKFNNTCSRYTKPP 429
           T+ Y C++ Y  S     L+T KFN+ C  +T  P
Sbjct: 51  TVFYSCSIYYKLSHAAHGLVTSKFNSLCGGFTTRP 85


>SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)
          Length = 472

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 684 LWPVSVKLCMTCDISRISLWR 746
           +W V V+ C+ CD+S   +WR
Sbjct: 65  VWRVRVRFCVECDVSMSGVWR 85



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 684 LWPVSVKLCMTCDISRIS-LWR 746
           +W V V+ C+ CD+S I+ +WR
Sbjct: 83  VWRVRVRFCVECDVSSIAVVWR 104


>SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 204 FHFNFLCEYRSLLPYKNNFPYCALRDLS*DKKCHN*DGL 320
           + F   C Y  +L +KN+    A RD+      H  DGL
Sbjct: 352 YQFRITCSYDEILRFKNSAALAATRDIKISGIKHGGDGL 390


>SB_37796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 165 RRVNSNIALASFEFHFNFLC--EYRSLLPYKNNFPYCALRDLS*DKKCHN*DGL--THFI 332
           RRVN  + +   EFHF   C      LL Y  N   C +R+L  D      D +  T  +
Sbjct: 122 RRVNVQMLVEELEFHFIAKCGSSDHELLLYPENRLQC-VRELCDDNCIPYTDIMKTTSVL 180

Query: 333 ILLCSVVLSKSNRHSSYHTKIQQYMLPLHKTPI 431
            + C  +    NR +++ TK   +++   K  I
Sbjct: 181 PVKCEPLQVLGNRIANFFTKFLSHLMVEEKALI 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,974,438
Number of Sequences: 59808
Number of extensions: 495712
Number of successful extensions: 1038
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)