Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00318
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.79 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.79 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   7.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = +2

Query: 266 LRSPRLVVGQEVSQLRRFNSLYHTIVLCRIIKVEQTFILSHENSTIHAPATQNPHML*VY 445
           +R   +V+ + +   + F+  Y+T V  R    EQ ++ +   + IH P T+   +  +Y
Sbjct: 102 MRHQAVVLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYALSVAVIHRPDTKLMKLPPMY 161

Query: 446 FLMRSIEYH 472
            +M  + ++
Sbjct: 162 EVMPHLYFN 170


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = +2

Query: 266 LRSPRLVVGQEVSQLRRFNSLYHTIVLCRIIKVEQTFILSHENSTIHAPATQNPHML*VY 445
           +R   +V+ + +   + F+  Y+T V  R    EQ ++ +   + IH P T+   +  +Y
Sbjct: 102 MRHQAVVLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYALSVAVIHRPDTKLMKLPPMY 161

Query: 446 FLMRSIEYH 472
            +M  + ++
Sbjct: 162 EVMPHLYFN 170


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 465 SIERIRKYT*S-IWGFCVAGACIVEFSCDKMN 373
           S+E   K T S +W  CVA +  +E+ C +++
Sbjct: 91  SVEPDSKVTYSGLWRVCVAISSRMEYECSRID 122


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 534 NYRHVYSNYNN 566
           NY + Y+NYNN
Sbjct: 93  NYNNNYNNYNN 103


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 534 NYRHVYSNYNN 566
           NY + Y+NYNN
Sbjct: 333 NYNNNYNNYNN 343


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 341 VLCRIIKVEQTFILSHENSTIHAPATQNPH 430
           +L  ++ +E   + SH N   +  +T  PH
Sbjct: 386 LLANVLDLEDNALASHNNLLNNVYSTPGPH 415


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 534 NYRHVYSNYNN 566
           NY + Y+NYNN
Sbjct: 329 NYNNNYNNYNN 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,647
Number of Sequences: 438
Number of extensions: 4553
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)