Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00317
         (782 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003622-1|AAO39625.1|  849|Drosophila melanogaster GH03315p pro...    31   1.3  
AE014298-845|AAF46124.2|  849|Drosophila melanogaster CG5905-PB,...    31   1.3  
AE014298-844|AAF46123.2|  849|Drosophila melanogaster CG5905-PA,...    31   1.3  
AE014296-3156|AAF49157.1|  728|Drosophila melanogaster CG9472-PA...    31   1.3  
EF680280-1|ABS71855.1|  353|Drosophila melanogaster 3'-5' exonuc...    31   2.3  
EF680279-1|ABS71854.1|  354|Drosophila melanogaster 3'-5' exonuc...    31   2.3  
AY051647-1|AAK93071.1|  353|Drosophila melanogaster GM14514p pro...    31   2.3  
AE014297-2505|AAF55541.2|  353|Drosophila melanogaster CG7670-PA...    31   2.3  

>BT003622-1|AAO39625.1|  849|Drosophila melanogaster GH03315p
           protein.
          Length = 849

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 346 VPQKENLVHVRALLLSVRELILHCVLEKPKIKLSNNVRLKKKTFF 212
           +P+  + +    +L   +++IL  VLE+P  +  N   +K KTFF
Sbjct: 213 IPEDRSSISTFEVLSDQQQVILRAVLEEPIDERDNKATIKAKTFF 257


>AE014298-845|AAF46124.2|  849|Drosophila melanogaster CG5905-PB,
           isoform B protein.
          Length = 849

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 346 VPQKENLVHVRALLLSVRELILHCVLEKPKIKLSNNVRLKKKTFF 212
           +P+  + +    +L   +++IL  VLE+P  +  N   +K KTFF
Sbjct: 213 IPEDRSSISTFEVLSDQQQVILRAVLEEPIDERDNKATIKAKTFF 257


>AE014298-844|AAF46123.2|  849|Drosophila melanogaster CG5905-PA,
           isoform A protein.
          Length = 849

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 346 VPQKENLVHVRALLLSVRELILHCVLEKPKIKLSNNVRLKKKTFF 212
           +P+  + +    +L   +++IL  VLE+P  +  N   +K KTFF
Sbjct: 213 IPEDRSSISTFEVLSDQQQVILRAVLEEPIDERDNKATIKAKTFF 257


>AE014296-3156|AAF49157.1|  728|Drosophila melanogaster CG9472-PA
           protein.
          Length = 728

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 123 FFTFILIMSNCQFCLWKNCSFKISVFIKQMKKVFFLSLTLLDNLIF 260
           F+  ++I++ C  C+W    F+       M  V FL++TLL  LIF
Sbjct: 10  FYLTLIIIAICVACIWMFSGFRHEYGKFNMILVAFLAVTLLQILIF 55


>EF680280-1|ABS71855.1|  353|Drosophila melanogaster 3'-5'
           exonuclease variant 2 protein.
          Length = 353

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 349 VVPQKENLVHVRALLLSVRELILHCVLEKPKIKLSNNVRLKKKTFFICFMKTEILNEQFF 170
           V+P  EN +   A+ + + ++I   +  + K+K+ N    K+K     F   + L E F 
Sbjct: 286 VIPLDENQLMYAAIDVYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFL 345

Query: 169 HKQN 158
            K N
Sbjct: 346 TKIN 349


>EF680279-1|ABS71854.1|  354|Drosophila melanogaster 3'-5'
           exonuclease variant 1 protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 349 VVPQKENLVHVRALLLSVRELILHCVLEKPKIKLSNNVRLKKKTFFICFMKTEILNEQFF 170
           V+P  EN +   A+ + + ++I   +  + K+K+ N    K+K     F   + L E F 
Sbjct: 287 VIPLDENQLMYAAIDVYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFL 346

Query: 169 HKQN 158
            K N
Sbjct: 347 TKIN 350


>AY051647-1|AAK93071.1|  353|Drosophila melanogaster GM14514p
           protein.
          Length = 353

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 349 VVPQKENLVHVRALLLSVRELILHCVLEKPKIKLSNNVRLKKKTFFICFMKTEILNEQFF 170
           V+P  EN +   A+ + + ++I   +  + K+K+ N    K+K     F   + L E F 
Sbjct: 286 VIPLDENQLMYAAIDVYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFL 345

Query: 169 HKQN 158
            K N
Sbjct: 346 TKIN 349


>AE014297-2505|AAF55541.2|  353|Drosophila melanogaster CG7670-PA
           protein.
          Length = 353

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 349 VVPQKENLVHVRALLLSVRELILHCVLEKPKIKLSNNVRLKKKTFFICFMKTEILNEQFF 170
           V+P  EN +   A+ + + ++I   +  + K+K+ N    K+K     F   + L E F 
Sbjct: 286 VIPLDENQLMYAAIDVYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFL 345

Query: 169 HKQN 158
            K N
Sbjct: 346 TKIN 349


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,883,484
Number of Sequences: 53049
Number of extensions: 568865
Number of successful extensions: 1131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)