Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00317
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   5.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 129 TFILIMSNCQFCLWK 173
           T +L+   C FC+WK
Sbjct: 179 TLLLVWILCYFCIWK 193


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
 Frame = -2

Query: 241 NVRLKKKTFFICFMK----TEILN 182
           NV +K    F CFMK    T+ILN
Sbjct: 111 NVHIKISKIFQCFMKYKTITDILN 134


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 375 GFKITSFTKLYLRRKTSCTCVL 310
           G+K+T F +L  +     TC L
Sbjct: 197 GYKVTGFEELAYKMGLESTCTL 218


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 129 TFILIMSNCQFCLWK 173
           T  ++   C FC+WK
Sbjct: 212 TLAVVWIMCYFCIWK 226


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 129 TFILIMSNCQFCLWK 173
           T  ++   C FC+WK
Sbjct: 265 TLAVVWIMCYFCIWK 279


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 270 NTQCNINSRTDNSRARTCTRFS 335
           NT+CN   RT +  ++T   +S
Sbjct: 352 NTKCNTLERTPSKCSQTSVHYS 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,860
Number of Sequences: 438
Number of extensions: 4184
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)