Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00317
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29200.1 68417.m04177 hypothetical protein                          28   6.1  
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-...    28   8.0  
At3g56320.1 68416.m06261 nucleotidyltransferase family protein c...    28   8.0  

>At4g29200.1 68417.m04177 hypothetical protein
          Length = 457

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 TFILIMSNCQFCLWKNCSFKISVFIKQ 209
           TF LI  NC  CL   C F++ VFI Q
Sbjct: 273 TFSLIFLNCT-CLCVKCGFELWVFIAQ 298


>At5g53430.1 68418.m06640 PHD finger family protein / SET
           domain-containing protein (TX5) contains Pfam domain,
           PF00628: PHD-finger and PF00856: SET domain; identical
           to cDNA  trithorax 5 (TX5) partial cds GI:16118406
          Length = 1043

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 606 KYRSKDSLNIKHQKHTHTPRQYRYT 532
           K  S  SL IK Q+   TPR Y+Y+
Sbjct: 147 KVSSNHSLKIKQQETKFTPRNYKYS 171


>At3g56320.1 68416.m06261 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 603

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 537 TGIVWEYEYVFGA*YLMNL*TGIFSIPLAVLFIKHM*YLRLVFHNSYCKEMKNVALIWSQ 716
           TG++  Y       Y++NL     S PLAVL+ K + Y      N+YC  +     I S 
Sbjct: 206 TGLISTYALAVLVLYIINLFHSSLSGPLAVLY-KFLDYYGSFDWNNYCISVNGPVPISSL 264

Query: 717 P 719
           P
Sbjct: 265 P 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,414
Number of Sequences: 28952
Number of extensions: 277863
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)