Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00316
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   3.4  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   4.5  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   4.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   6.0  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   6.0  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   7.9  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   7.9  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   7.9  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 473 DIDSTRLSTRQPSRVIVSYIISATNWIVLSGYWAATNALLNCRRH 339
           D  S++ STR   +    +I  +++   L   W A N+L+ C R+
Sbjct: 442 DSTSSKNSTRTSFKFTPLWIFESSDLAALDIAWTADNSLILCTRN 486


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 248 SPAIPRPGSVPRTTATFNYDSGSQ-QSGHHHNVACNSTM 361
           SPAI   G+V     T N D GSQ  S  H   A  +TM
Sbjct: 160 SPAIDSDGTVLAPIQTSNVDLGSQYYSSPHVRPAVGATM 198


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 227 SSLGKDFSPAIPRPGSVPRTTATFNYDSGSQQSGHHHNVACNS 355
           + +   F+ +IP    +P     ++ DS SQQS    N   N+
Sbjct: 76  AEIDNSFADSIPNEPEIPDMQDEYSRDSHSQQSVEEQNNTTNT 118


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -3

Query: 465 FHTPEH-TSTFQGYCKLYYQCH 403
           FH PE     ++G+   YY CH
Sbjct: 548 FHLPEELVPLYEGFQNYYYSCH 569


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 363 CIVELQATLWWCPDCWE 313
           C V+L+A  W CP C++
Sbjct: 68  CHVDLRARFWICPFCFQ 84


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 336 TMSPAIQQCIRSCPVTAEYNPVCGTDNITYNNPGRL 443
           T SP  QQC  +   +  Y+     D+I YN   RL
Sbjct: 574 TASPECQQCYYNYCWSGLYDDSAANDDIVYNPTCRL 609


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 324 LGTTTMSPAIQQCIRSCPVTAEYNPVCGTDNITY 425
           +GT+T+SP++++ +  CP     NP  G +  TY
Sbjct: 175 IGTSTLSPSVEEFV--CP-----NPQTGDNGTTY 201


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 227 SSLGKDFSPAIPRPGSVPRTTAT 295
           S+L   FSPA P P S   T AT
Sbjct: 208 STLPPGFSPATPAPTSAANTPAT 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,505
Number of Sequences: 5004
Number of extensions: 39844
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)