Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00316
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0070 - 14755864-14756157,14756853-14757011                       31   0.87 
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    30   1.1  
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406...    28   4.6  
03_01_0525 + 3952095-3952217,3953131-3953614,3953695-3953750,395...    28   4.6  
10_01_0117 + 1447741-1449123                                           28   6.1  
07_03_0082 - 13222635-13223350,13223368-13223928,13224095-132248...    27   8.1  

>02_03_0070 - 14755864-14756157,14756853-14757011
          Length = 150

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 212 PGLQGSSLGKDFSPAIPRPGSVPRT-----TATFNYDSGSQQSGHHHNVACNSTMH 364
           PG  G+   K  +PA  +P + P+T     T  F   S SQ S H   ++ +S+++
Sbjct: 27  PGKLGAQAKKPMTPAAKKPQATPKTKKRRITRLFKKGSSSQSSCHQDELSTHSSVN 82


>08_02_1457 +
           27260841-27260965,27261126-27261246,27263455-27263543,
           27263776-27263860,27263970-27264074,27264446-27264527,
           27264573-27264686,27265029-27265330,27265519-27266114,
           27266216-27266376,27266489-27266592,27266697-27266856,
           27266942-27267105,27267213-27267545,27267640-27267930,
           27268276-27268359,27268430-27268563,27268665-27268892,
           27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 435 QGYCKLYYQCHKLDCTQRLLGSYEC 361
           Q Y KLYYQ  K++C Q +LG  EC
Sbjct: 194 QPYNKLYYQAIKIECMQ-ILGLSEC 217


>09_06_0246 +
           21837144-21838194,21838692-21840038,21840576-21840656,
           21842740-21842924
          Length = 887

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 130 LCMSVRNKRQSNDDDDVLDDRYGWELTT 213
           LC+ + +   S+DDDD  DD   W+LTT
Sbjct: 653 LCLYLDSDDDSDDDDD--DDCCAWDLTT 678


>03_01_0525 +
           3952095-3952217,3953131-3953614,3953695-3953750,
           3953942-3954018,3954862-3954958,3955274-3955407,
           3955760-3955825,3955954-3956044
          Length = 375

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 404 TNWIVLSGYWAATNALLNCRRHCGGAQIV 318
           T WI    YWA  N L NC  H G  Q V
Sbjct: 17  TLWIGDLQYWADENYLYNCFAHTGELQSV 45


>10_01_0117 + 1447741-1449123
          Length = 460

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 372 CPVTAEY--NPVCGTDNITYNNPGRLTCAQACGINVSVLRSLPCP 500
           CP++ E   +PV G   ITY+  G      A G   +   S  CP
Sbjct: 27  CPISLELMRDPVVGPTGITYDRAGIEAWLLAAGAGKTAAASSTCP 71


>07_03_0082 -
           13222635-13223350,13223368-13223928,13224095-13224839,
           13226548-13226638,13227330-13227342,13227633-13227689,
           13229170-13229260,13229444-13229476,13229588-13230085
          Length = 934

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 285 VLGTDPGRGIAGEKSLPRELPWRPGGKLP 199
           VLG D G GI  E     + PW  G +LP
Sbjct: 313 VLGKDQGFGIDVELGFVLQSPWGRGSRLP 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,467
Number of Sequences: 37544
Number of extensions: 289050
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)