Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00316
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    37   0.009
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    32   0.25 
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   1.8  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   1.8  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...    28   5.5  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +3

Query: 372 CPVTAEYNPVCGTDNITYNNPGRLTCAQ 455
           C   +   PVCGTDN+TYNN   L C Q
Sbjct: 19  CDCPSVIRPVCGTDNVTYNNLCFLRCVQ 46


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 348 AIQQCIRSCPVTAEYNPVCGTDN-ITYNNPGRLTCAQACGI 467
           A++ C  +C   + +NPVC  D+ +T+ +P    CA   GI
Sbjct: 441 ALETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCADMPGI 481


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 372 CP-VTAEYNPVCGTDNITYNNPGRLTCAQAC 461
           CP  T E+  VCG+D  TY+N  RL  A AC
Sbjct: 465 CPSCTDEFKEVCGSDGKTYSNECRLQNA-AC 494



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 369 SCPVTAEYNPVCGTDNITYNN 431
           +C +++ Y P+CG+D I YNN
Sbjct: 685 TCNLSSNY-PICGSDGIVYNN 704


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 372 CP-VTAEYNPVCGTDNITYNNPGRLTCAQAC 461
           CP  T E+  VCG+D  TY+N  RL  A AC
Sbjct: 473 CPSCTDEFKEVCGSDGKTYSNECRLQNA-AC 502


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 148 NKRQSNDDDDVLDD 189
           N+R  NDDDD+LDD
Sbjct: 302 NRRSRNDDDDILDD 315


>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 378  VTAEYNPVCGTDNITYNNPGRLTCAQACGINVSVLRSLPCPTATKLLPAKLIKIVNQIIK 557
            V +EY P+CG D++ Y +     C      ++    SL      K +  +L K V++I K
Sbjct: 1151 VRSEYPPLCGRDHLAYRS-YYAPCKSVIDGDICEQFSLMDTQKQKDVAEELGKTVSEISK 1209

Query: 558  NMSD 569
             + D
Sbjct: 1210 KLED 1213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,000,134
Number of Sequences: 27780
Number of extensions: 242294
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)