Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00316
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    28   3.9  
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    28   3.9  
At1g17850.1 68414.m02209 expressed protein                             28   5.1  
At5g58870.1 68418.m07376 FtsH protease, putative contains simila...    27   6.8  
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    27   6.8  

>At2g28290.2 68415.m03434 chromatin remodeling protein, putative
           (SYD) similar to transcriptional activator HBRM [Homo
           sapiens] GI:414117; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain; identical to cDNA putative
           chromatin remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 357 VELQATLWWCPDC-WEPES*LNVAVVLGTDPGRGIAGEKSLPRELPWR 217
           V L +  +  P C W+      +   +  +PG  +AGE  LP   P+R
Sbjct: 233 VGLSSDAFTTPQCGWQSSEATAIRPAIHKEPGNNVAGEGFLPSGSPFR 280


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative
           (SYD) similar to transcriptional activator HBRM [Homo
           sapiens] GI:414117; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain; identical to cDNA putative
           chromatin remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 357 VELQATLWWCPDC-WEPES*LNVAVVLGTDPGRGIAGEKSLPRELPWR 217
           V L +  +  P C W+      +   +  +PG  +AGE  LP   P+R
Sbjct: 233 VGLSSDAFTTPQCGWQSSEATAIRPAIHKEPGNNVAGEGFLPSGSPFR 280


>At1g17850.1 68414.m02209 expressed protein
          Length = 423

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 408 CHKLDCTQRLLGSYECIVELQATLWWCPDC 319
           C  LDC +  L   EC+V+L+     C DC
Sbjct: 356 CANLDCNRLFLCCAECVVDLKGCC--CSDC 383


>At5g58870.1 68418.m07376 FtsH protease, putative contains
           similarity to cell division protein FtsH homolog 3
           SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
           sp.}
          Length = 806

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 251 PAIPRPGSVPRTTATF 298
           P IP PGS PRT  TF
Sbjct: 158 PGIPLPGSEPRTQTTF 173


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 369 SCPVTA-EYNPVCGTDNITYNNPGRLTCAQACGINVSVLRSLPC 497
           SCPV     +PVCG D++TY       CA A    V V++   C
Sbjct: 70  SCPVQCFRPDPVCGEDSVTY----WCGCADALCHGVRVVKQGAC 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,301
Number of Sequences: 28952
Number of extensions: 219795
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)